Variant report

Variant	rs9308102
Chromosome Location	chr4:166264421-166264422
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:166052131..166053206-chr4:166263833..166265852,12	MCF-7	breast:
2	chr4:166262631..166267437-chr4:166267990..166271315,4	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10002711	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10003171	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10024839	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10024849	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10024953	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10025186	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10025377	0.96[AFR][1000 genomes]
rs10517835	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1059209	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1059210	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1059212	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1059214	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1136537	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13918	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17046253	0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17046259	0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17046337	0.93[AFR][1000 genomes]
rs17046508	1.00[EUR][1000 genomes]
rs17435706	1.00[EUR][1000 genomes]
rs2241816	1.00[EUR][1000 genomes]
rs28469126	1.00[EUR][1000 genomes]
rs28484900	0.86[AFR][1000 genomes]
rs28491691	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28649956	1.00[EUR][1000 genomes]
rs28735257	0.87[AFR][1000 genomes]
rs6536905	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6817186	0.91[YRI][hapmap];0.85[AFR][1000 genomes]
rs6822290	0.80[AFR][1000 genomes]
rs6839161	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6846664	0.87[AFR][1000 genomes]
rs6849394	1.00[EUR][1000 genomes]
rs6852034	1.00[EUR][1000 genomes]
rs72997722	1.00[EUR][1000 genomes]
rs72997732	1.00[EUR][1000 genomes]
rs72997735	1.00[EUR][1000 genomes]
rs7664542	1.00[EUR][1000 genomes]
rs7674685	1.00[EUR][1000 genomes]
rs9308103	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9985842	1.00[EUR][1000 genomes]
rs9997634	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847399	chr4:166259587-166284836	Strong transcription Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166249600-166266600	Weak transcription	Left Ventricle	heart
2	chr4:166250000-166264600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr4:166250200-166265000	Weak transcription	Psoas Muscle	Psoas
4	chr4:166250200-166265200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr4:166250600-166265400	Weak transcription	Colonic Mucosa	Colon
6	chr4:166250600-166266800	Weak transcription	A549	lung
7	chr4:166252200-166269200	Weak transcription	Stomach Mucosa	stomach
8	chr4:166252200-166269400	Weak transcription	Gastric	stomach
9	chr4:166253400-166272600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr4:166253600-166265400	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr4:166253800-166265200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr4:166253800-166266600	Weak transcription	Small Intestine	intestine
13	chr4:166254000-166264600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr4:166254000-166264800	Weak transcription	Hela-S3	cervix
15	chr4:166254000-166265200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr4:166254000-166265200	Strong transcription	NHDF-Ad	bronchial
17	chr4:166254000-166269400	Weak transcription	Fetal Heart	heart
18	chr4:166254200-166265200	Strong transcription	Fetal Thymus	thymus
19	chr4:166254600-166265200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr4:166254600-166265400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr4:166255000-166264600	Strong transcription	HSMM	muscle
22	chr4:166255600-166265400	Strong transcription	Primary B cells from peripheral blood	blood
23	chr4:166255800-166265200	Strong transcription	Duodenum Mucosa	Duodenum
24	chr4:166255800-166265400	Strong transcription	HUVEC	blood vessel
25	chr4:166255800-166266800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr4:166256400-166264600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr4:166256600-166264800	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr4:166256600-166265200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr4:166256800-166265200	Strong transcription	HUES6 Cell Line	embryonic stem cell
30	chr4:166256800-166265200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr4:166257000-166265200	Strong transcription	HMEC	breast
32	chr4:166257400-166265400	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr4:166257600-166265200	Strong transcription	Primary T helper cells PMA-I stimulated	--
34	chr4:166257800-166265200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr4:166258000-166265200	Strong transcription	HUES64 Cell Line	embryonic stem cell
36	chr4:166258000-166265200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr4:166258200-166265200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr4:166258600-166265600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr4:166258800-166265000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr4:166258800-166265200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr4:166258800-166265400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr4:166258800-166265400	Weak transcription	Fetal Muscle Leg	muscle
43	chr4:166259000-166267800	Weak transcription	Fetal Brain Male	brain
44	chr4:166259200-166265400	Strong transcription	Dnd41	blood
45	chr4:166259400-166265200	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr4:166259800-166264600	Strong transcription	Primary neutrophils fromperipheralblood	blood
47	chr4:166259800-166265200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr4:166259800-166266800	Weak transcription	Brain Angular Gyrus	brain
49	chr4:166260600-166265200	Weak transcription	Fetal Intestine Small	intestine
50	chr4:166260600-166265400	Strong transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links