Variant report

Variant	rs1059212
Chromosome Location	chr4:166263428-166263429
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:166253639..166255171-chr4:166261974..166264196,2	K562	blood:
2	chr4:166262631..166267437-chr4:166267990..166271315,4	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10002711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10003171	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10024839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10024849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10024953	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10025186	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10025377	0.98[AFR][1000 genomes]
rs10517835	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1059209	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1059210	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1059214	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1136537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13918	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17046253	0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17046259	0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17046337	0.95[AFR][1000 genomes]
rs17046508	1.00[EUR][1000 genomes]
rs17435706	1.00[EUR][1000 genomes]
rs2241816	1.00[EUR][1000 genomes]
rs28469126	1.00[EUR][1000 genomes]
rs28484900	0.88[AFR][1000 genomes]
rs28491691	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28649956	1.00[EUR][1000 genomes]
rs28735257	0.89[AFR][1000 genomes]
rs6536905	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6817186	0.92[YRI][hapmap];0.87[AFR][1000 genomes]
rs6822290	0.82[AFR][1000 genomes]
rs6839161	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6846664	0.89[AFR][1000 genomes]
rs6849394	1.00[EUR][1000 genomes]
rs6852034	1.00[EUR][1000 genomes]
rs72997722	1.00[EUR][1000 genomes]
rs72997732	1.00[EUR][1000 genomes]
rs72997735	1.00[EUR][1000 genomes]
rs7664542	1.00[EUR][1000 genomes]
rs7674685	1.00[EUR][1000 genomes]
rs9308102	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9308103	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9985842	1.00[EUR][1000 genomes]
rs9997634	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847399	chr4:166259587-166284836	Strong transcription Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166249600-166266600	Weak transcription	Left Ventricle	heart
2	chr4:166250000-166264600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr4:166250200-166263800	Weak transcription	Colon Smooth Muscle	Colon
4	chr4:166250200-166265000	Weak transcription	Psoas Muscle	Psoas
5	chr4:166250200-166265200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:166250600-166265400	Weak transcription	Colonic Mucosa	Colon
7	chr4:166250600-166266800	Weak transcription	A549	lung
8	chr4:166252200-166269200	Weak transcription	Stomach Mucosa	stomach
9	chr4:166252200-166269400	Weak transcription	Gastric	stomach
10	chr4:166253400-166272600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr4:166253600-166265400	Strong transcription	HUES48 Cell Line	embryonic stem cell
12	chr4:166253800-166265200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr4:166253800-166266600	Weak transcription	Small Intestine	intestine
14	chr4:166254000-166264600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr4:166254000-166264800	Weak transcription	Hela-S3	cervix
16	chr4:166254000-166265200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr4:166254000-166265200	Strong transcription	NHDF-Ad	bronchial
18	chr4:166254000-166269400	Weak transcription	Fetal Heart	heart
19	chr4:166254200-166264200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr4:166254200-166265200	Strong transcription	Fetal Thymus	thymus
21	chr4:166254600-166265200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr4:166254600-166265400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr4:166254800-166264200	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr4:166255000-166263600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr4:166255000-166264200	Strong transcription	Fetal Muscle Trunk	muscle
26	chr4:166255000-166264600	Strong transcription	HSMM	muscle
27	chr4:166255600-166265400	Strong transcription	Primary B cells from peripheral blood	blood
28	chr4:166255800-166265200	Strong transcription	Duodenum Mucosa	Duodenum
29	chr4:166255800-166265400	Strong transcription	HUVEC	blood vessel
30	chr4:166255800-166266800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr4:166256400-166264600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr4:166256600-166264800	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr4:166256600-166265200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
34	chr4:166256800-166264200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
35	chr4:166256800-166264400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr4:166256800-166265200	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr4:166256800-166265200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr4:166257000-166265200	Strong transcription	HMEC	breast
39	chr4:166257400-166265400	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr4:166257600-166263800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr4:166257600-166265200	Strong transcription	Primary T helper cells PMA-I stimulated	--
42	chr4:166257800-166264000	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr4:166257800-166265200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr4:166258000-166264200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr4:166258000-166265200	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr4:166258000-166265200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr4:166258200-166265200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr4:166258400-166264000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr4:166258600-166265600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr4:166258800-166265000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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