Variant report

Variant	rs28649956
Chromosome Location	chr4:166281154-166281155
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:166276597..166279121-chr4:166279967..166282162,2	K562	blood:
2	chr4:166279563..166282339-chr4:166287037..166289622,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10002711	1.00[EUR][1000 genomes]
rs10003171	1.00[EUR][1000 genomes]
rs10024839	1.00[EUR][1000 genomes]
rs10024849	1.00[EUR][1000 genomes]
rs10024953	1.00[EUR][1000 genomes]
rs10025186	1.00[EUR][1000 genomes]
rs10517835	1.00[EUR][1000 genomes]
rs1059209	1.00[EUR][1000 genomes]
rs1059210	1.00[EUR][1000 genomes]
rs1059212	1.00[EUR][1000 genomes]
rs1059214	1.00[EUR][1000 genomes]
rs1136537	1.00[EUR][1000 genomes]
rs13918	1.00[EUR][1000 genomes]
rs17046253	1.00[EUR][1000 genomes]
rs17046259	1.00[EUR][1000 genomes]
rs17046508	1.00[EUR][1000 genomes]
rs17435706	1.00[EUR][1000 genomes]
rs2241816	1.00[EUR][1000 genomes]
rs28469126	1.00[EUR][1000 genomes]
rs28491691	1.00[EUR][1000 genomes]
rs6536905	1.00[EUR][1000 genomes]
rs6849394	1.00[EUR][1000 genomes]
rs6852034	1.00[EUR][1000 genomes]
rs72997722	1.00[EUR][1000 genomes]
rs72997732	1.00[EUR][1000 genomes]
rs72997735	1.00[EUR][1000 genomes]
rs7664542	1.00[EUR][1000 genomes]
rs7674685	1.00[EUR][1000 genomes]
rs9308102	1.00[EUR][1000 genomes]
rs9308103	1.00[EUR][1000 genomes]
rs9985842	1.00[EUR][1000 genomes]
rs9997634	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847399	chr4:166259587-166284836	Strong transcription Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166277600-166285400	Weak transcription	HepG2	liver
2	chr4:166278200-166282800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr4:166279200-166281800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:166279400-166281200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:166279800-166281600	Enhancers	HMEC	breast
6	chr4:166280200-166281600	Enhancers	HSMMtube	muscle
7	chr4:166280200-166284800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr4:166280400-166281200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr4:166280400-166281200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr4:166280400-166281200	Enhancers	NHEK	skin
11	chr4:166280400-166281400	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr4:166280400-166281600	Enhancers	Hela-S3	cervix
13	chr4:166280400-166281800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr4:166280400-166282000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr4:166280400-166282400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr4:166280600-166281200	Enhancers	HSMM	muscle
17	chr4:166280600-166281400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:166280800-166281600	Bivalent Enhancer	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr4:166280800-166281600	Enhancers	Fetal Lung	lung
20	chr4:166281000-166282000	Enhancers	Adipose Nuclei	Adipose
21	chr4:166281000-166282000	Enhancers	NHDF-Ad	bronchial
22	chr4:166281000-166282600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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