Variant report

Variant	rs10025186
Chromosome Location	chr4:166265328-166265329
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:166052131..166053206-chr4:166263833..166265852,12	MCF-7	breast:
2	chr4:166249129..166252121-chr4:166265324..166266921,2	K562	blood:
3	chr4:166051363..166053095-chr4:166265302..166266870,2	MCF-7	breast:
4	chr4:166262631..166267437-chr4:166267990..166271315,4	K562	blood:
5	chr4:166034224..166034823-chr4:166264610..166265422,2	MCF-7	breast:
6	chr4:166265012..166266616-chr4:166301468..166303091,2	K562	blood:
7	chr4:166052186..166053056-chr4:166264613..166265364,4	MCF-7	breast:
8	chr4:166248172..166250457-chr4:166265165..166267668,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000052802	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10002711	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10003171	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10024839	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10024849	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10024953	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10025377	0.96[AFR][1000 genomes]
rs10517835	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1059209	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1059210	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1059212	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1059214	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1136537	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13918	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17046253	0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17046259	0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17046337	0.93[AFR][1000 genomes]
rs17046508	1.00[EUR][1000 genomes]
rs17435706	1.00[EUR][1000 genomes]
rs2241816	1.00[EUR][1000 genomes]
rs28469126	1.00[EUR][1000 genomes]
rs28484900	0.86[AFR][1000 genomes]
rs28491691	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28649956	1.00[EUR][1000 genomes]
rs28735257	0.87[AFR][1000 genomes]
rs6536905	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6817186	0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs6822290	0.80[AFR][1000 genomes]
rs6839161	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6846664	0.87[AFR][1000 genomes]
rs6849394	1.00[EUR][1000 genomes]
rs6852034	1.00[EUR][1000 genomes]
rs72997722	1.00[EUR][1000 genomes]
rs72997732	1.00[EUR][1000 genomes]
rs72997735	1.00[EUR][1000 genomes]
rs7664542	1.00[EUR][1000 genomes]
rs7674685	1.00[EUR][1000 genomes]
rs9308102	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9308103	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9985842	1.00[EUR][1000 genomes]
rs9997634	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847399	chr4:166259587-166284836	Strong transcription Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166249600-166266600	Weak transcription	Left Ventricle	heart
2	chr4:166250600-166265400	Weak transcription	Colonic Mucosa	Colon
3	chr4:166250600-166266800	Weak transcription	A549	lung
4	chr4:166252200-166269200	Weak transcription	Stomach Mucosa	stomach
5	chr4:166252200-166269400	Weak transcription	Gastric	stomach
6	chr4:166253400-166272600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:166253600-166265400	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr4:166253800-166266600	Weak transcription	Small Intestine	intestine
9	chr4:166254000-166269400	Weak transcription	Fetal Heart	heart
10	chr4:166254600-166265400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr4:166255600-166265400	Strong transcription	Primary B cells from peripheral blood	blood
12	chr4:166255800-166265400	Strong transcription	HUVEC	blood vessel
13	chr4:166255800-166266800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:166257400-166265400	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr4:166258600-166265600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr4:166258800-166265400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:166258800-166265400	Weak transcription	Fetal Muscle Leg	muscle
18	chr4:166259000-166267800	Weak transcription	Fetal Brain Male	brain
19	chr4:166259200-166265400	Strong transcription	Dnd41	blood
20	chr4:166259800-166266800	Weak transcription	Brain Angular Gyrus	brain
21	chr4:166260600-166265400	Strong transcription	GM12878-XiMat	blood
22	chr4:166260600-166265800	Weak transcription	Lung	lung
23	chr4:166260600-166266600	Weak transcription	Fetal Stomach	stomach
24	chr4:166260600-166268400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr4:166261200-166266200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr4:166261400-166265400	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr4:166261400-166267000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr4:166261400-166267000	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr4:166261400-166267000	Weak transcription	Ovary	ovary
30	chr4:166261400-166272600	Weak transcription	HSMMtube	muscle
31	chr4:166261600-166266600	Weak transcription	Brain Hippocampus Middle	brain
32	chr4:166261600-166266800	Weak transcription	Primary T cells from cord blood	blood
33	chr4:166261600-166266800	Weak transcription	Brain Cingulate Gyrus	brain
34	chr4:166261600-166267000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr4:166261600-166267400	Weak transcription	Primary hematopoietic stem cells	blood
36	chr4:166261600-166272800	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr4:166261800-166267600	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr4:166261800-166267800	Weak transcription	Brain Germinal Matrix	brain
39	chr4:166262000-166266000	Weak transcription	Brain Substantia Nigra	brain
40	chr4:166262000-166266800	Weak transcription	Fetal Kidney	kidney
41	chr4:166262000-166267200	Weak transcription	NHEK	skin
42	chr4:166262000-166267400	Weak transcription	HepG2	liver
43	chr4:166262000-166268000	Weak transcription	Stomach Smooth Muscle	stomach
44	chr4:166262000-166268200	Weak transcription	Fetal Lung	lung
45	chr4:166262200-166267200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr4:166262400-166266800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr4:166262800-166266800	Weak transcription	Brain Anterior Caudate	brain
48	chr4:166263000-166266800	Weak transcription	Fetal Brain Female	brain
49	chr4:166263200-166265800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr4:166263200-166266200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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