Variant report

Variant	rs28491691
Chromosome Location	chr4:166269615-166269616
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:166262631..166267437-chr4:166267990..166271315,4	K562	blood:
2	chr4:166247031..166249903-chr4:166268462..166270625,2	K562	blood:

Variant related genes	Relation type
ENSG00000052802	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10002711	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10003171	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10024839	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10024849	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10024953	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10025186	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10025377	0.87[AFR][1000 genomes]
rs10517835	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1059209	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1059210	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1059212	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1059214	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1136537	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13106028	0.85[AFR][1000 genomes]
rs13918	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17046253	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17046259	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17046337	0.90[AFR][1000 genomes]
rs17046508	1.00[EUR][1000 genomes]
rs17435706	1.00[EUR][1000 genomes]
rs2241816	1.00[EUR][1000 genomes]
rs28469126	1.00[EUR][1000 genomes]
rs28484900	0.95[AFR][1000 genomes]
rs28649956	1.00[EUR][1000 genomes]
rs28735257	0.96[AFR][1000 genomes]
rs6536905	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6839161	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs6846664	0.96[AFR][1000 genomes]
rs6849394	1.00[EUR][1000 genomes]
rs6852034	1.00[EUR][1000 genomes]
rs72997722	1.00[EUR][1000 genomes]
rs72997732	1.00[EUR][1000 genomes]
rs72997735	1.00[EUR][1000 genomes]
rs7664542	1.00[EUR][1000 genomes]
rs7674685	1.00[EUR][1000 genomes]
rs9308102	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9308103	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9985842	1.00[EUR][1000 genomes]
rs9997634	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847399	chr4:166259587-166284836	Strong transcription Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
2	esv2763404	chr4:166265940-166275340	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166253400-166272600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:166261400-166272600	Weak transcription	HSMMtube	muscle
3	chr4:166261600-166272800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr4:166263200-166280400	Weak transcription	Adipose Nuclei	Adipose
5	chr4:166263400-166272800	Weak transcription	NH-A	brain
6	chr4:166264000-166271600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr4:166264000-166274600	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr4:166264200-166274800	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr4:166264400-166270200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:166265200-166269800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:166265200-166270000	Weak transcription	HMEC	breast
12	chr4:166265200-166271000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr4:166265200-166272400	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr4:166265400-166269800	Weak transcription	Primary B cells from peripheral blood	blood
15	chr4:166265400-166270000	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr4:166267000-166272800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr4:166269000-166269800	Enhancers	Liver	Liver
18	chr4:166269000-166270200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr4:166269200-166270400	Enhancers	Stomach Mucosa	stomach
20	chr4:166269200-166270400	Enhancers	K562	blood
21	chr4:166269400-166269800	Enhancers	HepG2	liver
22	chr4:166269400-166270200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr4:166269400-166270200	Enhancers	Fetal Heart	heart
24	chr4:166269400-166270200	Enhancers	Gastric	stomach
25	chr4:166269600-166270000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr4:166269600-166270200	Weak transcription	Duodenum Mucosa	Duodenum

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