Variant report

Variant rs17489060
Chromosome Location chr4:166304912-166304913
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:166300800-166305000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr4:166300800-166305000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
3 chr4:166300800-166305000 Weak transcription HMEC breast
4 chr4:166301000-166305000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
5 chr4:166301200-166305400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
6 chr4:166301200-166305400 Weak transcription Esophagus oesophagus
7 chr4:166301400-166305000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
8 chr4:166301400-166305400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr4:166301400-166305400 Weak transcription Fetal Muscle Trunk muscle
10 chr4:166301400-166305600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
11 chr4:166301400-166314800 Weak transcription Fetal Kidney kidney
12 chr4:166301600-166305000 Weak transcription Breast Myoepithelial Primary Cells Breast
13 chr4:166302000-166305800 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
14 chr4:166302200-166314600 Weak transcription Brain Substantia Nigra brain
15 chr4:166302400-166305600 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
16 chr4:166302400-166306600 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
17 chr4:166302600-166305000 Weak transcription Cortex derived primary cultured neurospheres brain
18 chr4:166302600-166306600 Weak transcription Brain Germinal Matrix brain
19 chr4:166303000-166306800 Enhancers Fetal Adrenal Gland Adrenal Gland
20 chr4:166303200-166305400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
21 chr4:166303200-166305400 Enhancers HepG2 liver
22 chr4:166303200-166306800 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
23 chr4:166303200-166307400 Weak transcription HUES48 Cell Line embryonic stem cell
24 chr4:166303800-166307000 Enhancers Fetal Lung lung
25 chr4:166304000-166311000 Weak transcription Brain Hippocampus Middle brain
26 chr4:166304200-166305000 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
27 chr4:166304200-166305000 Enhancers Fetal Brain Male brain
28 chr4:166304200-166306600 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
29 chr4:166304400-166305200 Enhancers Brain Cingulate Gyrus brain
30 chr4:166304400-166305400 Active TSS Aorta Aorta
31 chr4:166304400-166305600 Weak transcription Brain Inferior Temporal Lobe brain
32 chr4:166304400-166332400 Weak transcription Brain Angular Gyrus brain
33 chr4:166304600-166305000 Flanking Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
34 chr4:166304600-166305200 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
35 chr4:166304600-166306400 Enhancers Brain Anterior Caudate brain
36 chr4:166304800-166305200 Flanking Active TSS Pancreatic Islets Pancreatic Islet
37 chr4:166304800-166305400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
38 chr4:166304800-166305600 Enhancers HUES64 Cell Line embryonic stem cell
39 chr4:166304800-166305800 Enhancers HUES6 Cell Line embryonic stem cell
40 chr4:166304800-166305800 Enhancers NHEK skin
41 chr4:166304800-166306200 Flanking Active TSS Fetal Brain Female brain
42 chr4:166304800-166306600 Enhancers Fetal Stomach stomach

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