Variant report

Variant	rs934814
Chromosome Location	chr4:166286326-166286327
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:166284247..166286679-chr4:166288539..166290783,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11940090	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12506365	1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13106028	1.00[ASN][1000 genomes]
rs13137171	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17489060	1.00[CHB][hapmap]
rs17489067	1.00[CHB][hapmap]
rs4690813	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4691187	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6536907	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6536908	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6842704	1.00[ASN][1000 genomes]
rs6853552	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7671176	1.00[ASN][1000 genomes]
rs7677572	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7696111	0.82[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs934814	HAVCR2	trans	lymphoblastoid	seeQTL

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166282600-166290800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:166283600-166288600	Enhancers	Fetal Intestine Large	intestine
3	chr4:166284400-166287600	Enhancers	Fetal Intestine Small	intestine
4	chr4:166284800-166286800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:166285400-166286800	Enhancers	HMEC	breast
6	chr4:166285400-166290000	Enhancers	HepG2	liver
7	chr4:166285600-166286400	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr4:166285600-166286600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr4:166285800-166286400	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr4:166285800-166286400	Active TSS	Rectal Mucosa Donor 29	rectum
11	chr4:166285800-166286600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr4:166285800-166286600	Enhancers	H9 Cell Line	embryonic stem cell
13	chr4:166285800-166286600	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr4:166285800-166286800	Enhancers	Hela-S3	cervix
15	chr4:166286000-166286400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr4:166286000-166286400	Enhancers	Rectal Smooth Muscle	rectum
17	chr4:166286000-166286600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr4:166286000-166286600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr4:166286000-166286600	Enhancers	Duodenum Mucosa	Duodenum
20	chr4:166286000-166286800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
21	chr4:166286000-166289200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links