Variant report

Variant	rs12506365
Chromosome Location	chr4:166281785-166281786
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11940090	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13106028	1.00[ASN][1000 genomes]
rs13137171	1.00[ASN][1000 genomes]
rs4690813	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4691187	1.00[CHD][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6536907	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs6536908	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6842704	1.00[ASN][1000 genomes]
rs7671176	1.00[ASN][1000 genomes]
rs7677572	1.00[CHD][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7696111	0.82[ASN][1000 genomes]
rs934814	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847399	chr4:166259587-166284836	Strong transcription Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166277600-166285400	Weak transcription	HepG2	liver
2	chr4:166278200-166282800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr4:166279200-166281800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:166280200-166284800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr4:166280400-166281800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr4:166280400-166282000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr4:166280400-166282400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr4:166281000-166282000	Enhancers	Adipose Nuclei	Adipose
9	chr4:166281000-166282000	Enhancers	NHDF-Ad	bronchial
10	chr4:166281000-166282600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:166281200-166282000	Bivalent Enhancer	Osteobl	bone
12	chr4:166281600-166282000	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr4:166281600-166285400	Weak transcription	HMEC	breast
14	chr4:166281600-166285800	Weak transcription	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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