Variant report

Variant	rs4690821
Chromosome Location	chr4:166405584-166405585
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:166396763..166399582-chr4:166403526..166406591,3	K562	blood:
2	chr4:166400333..166403085-chr4:166404913..166406877,3	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11732504	0.89[AMR][1000 genomes]
rs11734444	1.00[CEU][hapmap];0.86[CHB][hapmap];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11734732	1.00[CEU][hapmap];0.86[CHB][hapmap];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11737095	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17502660	0.81[EUR][1000 genomes]
rs17631042	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17686888	1.00[MEX][hapmap]
rs17687250	1.00[MEX][hapmap];0.85[TSI][hapmap]
rs17687429	1.00[ASW][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2276931	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2304592	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28496971	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3775313	1.00[ASW][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3775315	0.85[CHB][hapmap];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4690818	1.00[MEX][hapmap]
rs4691194	1.00[MEX][hapmap];0.85[TSI][hapmap]
rs72703674	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72703678	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72703686	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72705403	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72705404	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72705405	0.86[EUR][1000 genomes]
rs72705408	0.89[AMR][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166386400-166414400	Weak transcription	Fetal Brain Male	brain
2	chr4:166389800-166414600	Weak transcription	Ovary	ovary
3	chr4:166390600-166407200	Weak transcription	Aorta	Aorta
4	chr4:166391600-166414400	Weak transcription	Fetal Kidney	kidney
5	chr4:166392200-166405600	Weak transcription	Pancreas	Pancrea
6	chr4:166392200-166419600	Weak transcription	Brain Angular Gyrus	brain
7	chr4:166393600-166408600	Weak transcription	Brain Anterior Caudate	brain
8	chr4:166394600-166408600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr4:166395400-166408600	Weak transcription	Brain Hippocampus Middle	brain
10	chr4:166395600-166419400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr4:166396400-166425400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr4:166396800-166407000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr4:166397000-166408000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr4:166397200-166408800	Weak transcription	Fetal Stomach	stomach
15	chr4:166397400-166408200	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr4:166397600-166427600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr4:166397600-166428200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr4:166398000-166409400	Weak transcription	Brain Germinal Matrix	brain
19	chr4:166398000-166427000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr4:166398200-166405600	Weak transcription	Esophagus	oesophagus
21	chr4:166398200-166407800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr4:166398200-166420000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr4:166399200-166424600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr4:166401200-166412800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr4:166402800-166405600	Weak transcription	Fetal Intestine Large	intestine
26	chr4:166403000-166408600	Weak transcription	Brain Substantia Nigra	brain
27	chr4:166403400-166412000	Strong transcription	HepG2	liver
28	chr4:166403600-166424800	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr4:166403800-166423200	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr4:166404000-166414800	Weak transcription	Fetal Lung	lung
31	chr4:166404200-166408600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr4:166404200-166414000	Weak transcription	Fetal Intestine Small	intestine
33	chr4:166404400-166406200	Weak transcription	Fetal Brain Female	brain
34	chr4:166405000-166408200	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr4:166405200-166407600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr4:166405400-166405600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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