Variant report

Variant	rs11732504
Chromosome Location	chr4:166431502-166431503
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11732129	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11732206	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11736487	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17587323	0.80[EUR][1000 genomes]
rs17631042	0.93[JPT][hapmap];1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs17631193	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28655188	0.84[ASN][1000 genomes]
rs4690821	0.89[AMR][1000 genomes]
rs72705404	0.89[AMR][1000 genomes]
rs72705408	1.00[AMR][1000 genomes]
rs72705414	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72705416	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72705417	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508327	chr4:166424440-166475679	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166420800-166433400	Weak transcription	Brain Germinal Matrix	brain
2	chr4:166421400-166433200	Weak transcription	Fetal Brain Male	brain
3	chr4:166422000-166433200	Weak transcription	Fetal Brain Female	brain
4	chr4:166428400-166433400	Weak transcription	Fetal Lung	lung
5	chr4:166429000-166433800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr4:166429200-166438000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr4:166429400-166431600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr4:166429800-166433600	Weak transcription	Hela-S3	cervix
9	chr4:166430200-166431600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:166430400-166431600	Enhancers	Adipose Nuclei	Adipose
11	chr4:166430400-166432000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr4:166431000-166432000	Enhancers	Fetal Stomach	stomach
13	chr4:166431200-166435200	Enhancers	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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