Variant report
Variant | rs11734974 |
---|---|
Chromosome Location | chr4:9764564-9764565 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:10)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:10 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr2:91815162..91820044-chr4:9763391..9768700,25 | MCF-7 | breast: | |
2 | chr1:149221736..149225365-chr4:9763717..9766826,4 | MCF-7 | breast: | |
3 | chr4:9764417..9765133-chr4:10016121..10017439,5 | MCF-7 | breast: | |
4 | chr4:9764445..9765327-chr4:10020033..10020988,3 | K562 | blood: | |
5 | chr4:9764437..9765430-chr4:10020023..10020916,6 | MCF-7 | breast: | |
6 | chr4:9764370..9765339-chr4:10015197..10016013,4 | MCF-7 | breast: | |
7 | chr4:9763456..9766236-chr4:10014004..10016919,3 | K562 | blood: | |
8 | chr2:91816303..91817383-chr4:9764391..9765414,6 | MCF-7 | breast: | |
9 | chr2:91816443..91817305-chr4:9764390..9765414,6 | MCF-7 | breast: | |
10 | chr4:9764428..9765300-chr4:10016550..10017565,3 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000109667 | Chromatin interaction |
ENSG00000206737 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10805313 | 0.82[CEU][hapmap] |
rs10939504 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs10939507 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs10939514 | 1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs11723334 | 0.86[AFR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs11729600 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11733815 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11734890 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12501256 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs13101880 | 0.82[CEU][hapmap] |
rs1519094 | 0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs1519095 | 0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs1533615 | 0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs1818670 | 0.84[EUR][1000 genomes] |
rs1850737 | 0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs1850739 | 1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs1878275 | 1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs2280208 | 0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs2867388 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs3973946 | 0.85[ASN][1000 genomes] |
rs4299578 | 0.90[ASN][1000 genomes] |
rs4554078 | 0.82[CEU][hapmap];0.88[TSI][hapmap] |
rs4974823 | 0.82[CEU][hapmap] |
rs6448982 | 0.87[EUR][1000 genomes] |
rs6449000 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs6833148 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs6834270 | 0.86[JPT][hapmap] |
rs6834512 | 1.00[CEU][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs6834697 | 0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs6841978 | 0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs6858644 | 0.87[EUR][1000 genomes] |
rs7657127 | 1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs7661082 | 0.91[AFR][1000 genomes];0.93[EUR][1000 genomes] |
rs7664304 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7664572 | 0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs7668469 | 0.87[EUR][1000 genomes] |
rs7678732 | 0.82[CEU][hapmap] |
rs7684214 | 0.82[CEU][hapmap];0.85[YRI][hapmap] |
rs7685974 | 0.84[EUR][1000 genomes] |
rs9291607 | 0.82[CEU][hapmap];0.88[TSI][hapmap] |
rs9685502 | 1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv533218 | chr4:9371016-10252290 | Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 74 gene(s) | inside rSNPs | diseases |
2 | esv2754610 | chr4:9372303-9804524 | Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 28 gene(s) | inside rSNPs | diseases |
3 | nsv530090 | chr4:9383695-10165033 | Enhancers Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 70 gene(s) | inside rSNPs | diseases |
4 | nsv1012865 | chr4:9429299-9794181 | Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 23 gene(s) | inside rSNPs | diseases |
5 | nsv1001143 | chr4:9435322-9794181 | Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 23 gene(s) | inside rSNPs | diseases |
6 | nsv1012621 | chr4:9456977-9802366 | Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 23 gene(s) | inside rSNPs | diseases |
7 | nsv1012634 | chr4:9461218-9802366 | Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 22 gene(s) | inside rSNPs | diseases |
8 | nsv998043 | chr4:9496282-9830208 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 18 gene(s) | inside rSNPs | diseases |
9 | nsv878667 | chr4:9543673-9903121 | ZNF genes & repeats Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 16 gene(s) | inside rSNPs | diseases |
10 | nsv878669 | chr4:9551094-9794724 | Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 16 gene(s) | inside rSNPs | diseases |
11 | nsv964031 | chr4:9629449-9764955 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
12 | nsv999102 | chr4:9633247-9794181 | Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
13 | nsv1014216 | chr4:9713612-10223836 | Transcr. at gene 5' and 3' Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 53 gene(s) | inside rSNPs | diseases |
14 | nsv1010249 | chr4:9716101-10086188 | Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 15 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:9755800-9766200 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
2 | chr4:9760400-9766200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
3 | chr4:9760600-9765000 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
4 | chr4:9763600-9767600 | Weak transcription | Right Atrium | heart |
5 | chr4:9764400-9764800 | Enhancers | Fetal Intestine Small | intestine |
6 | chr4:9764400-9765200 | Enhancers | Breast Myoepithelial Primary Cells | Breast |