Variant report

Variant	rs11736192
Chromosome Location	chr4:57786797-57786798
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:57772930..57780141-chr4:57782916..57788353,10	K562	blood:
2	chr4:57778640..57781071-chr4:57785641..57787696,2	K562	blood:
3	chr4:57785111..57787952-chr4:57797814..57799523,2	K562	blood:

Variant related genes	Relation type
ENSG00000084093	Chromatin interaction

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10008356	0.82[ASN][1000 genomes]
rs10030913	0.90[ASN][1000 genomes]
rs10866440	0.90[ASN][1000 genomes]
rs1105434	0.82[ASN][1000 genomes]
rs1107675	0.82[ASN][1000 genomes]
rs11729152	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11730525	0.88[ASN][1000 genomes]
rs11734953	0.84[ASN][1000 genomes]
rs11736808	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11736869	0.84[ASN][1000 genomes]
rs11736965	0.81[ASN][1000 genomes]
rs11932673	0.83[ASN][1000 genomes]
rs11933908	0.88[ASN][1000 genomes]
rs12500454	0.82[ASN][1000 genomes]
rs12501990	0.82[ASN][1000 genomes]
rs13108245	0.88[ASN][1000 genomes]
rs13113802	0.89[ASN][1000 genomes]
rs13116564	0.86[ASN][1000 genomes]
rs13146960	0.88[ASN][1000 genomes]
rs13149162	0.87[ASN][1000 genomes]
rs13353552	0.84[ASN][1000 genomes]
rs17087307	0.83[ASN][1000 genomes]
rs17087317	0.83[ASN][1000 genomes]
rs1718839	0.81[ASN][1000 genomes]
rs1877669	0.88[ASN][1000 genomes]
rs1976780	0.83[ASN][1000 genomes]
rs2002153	0.82[ASN][1000 genomes]
rs2090962	0.86[ASN][1000 genomes]
rs2228991	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3000	0.88[ASN][1000 genomes]
rs34659774	0.83[ASN][1000 genomes]
rs3733306	0.80[ASN][1000 genomes]
rs3796528	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3806745	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4276341	0.86[ASN][1000 genomes]
rs4864606	0.88[ASN][1000 genomes]
rs4864607	0.87[ASN][1000 genomes]
rs4864608	0.82[ASN][1000 genomes]
rs4865157	0.81[ASN][1000 genomes]
rs4865158	0.80[ASN][1000 genomes]
rs4865159	0.82[ASN][1000 genomes]
rs4865160	0.82[ASN][1000 genomes]
rs55822707	0.86[ASN][1000 genomes]
rs62308135	0.88[ASN][1000 genomes]
rs62308136	0.88[ASN][1000 genomes]
rs62308137	0.87[ASN][1000 genomes]
rs6554393	0.81[ASN][1000 genomes]
rs6554394	0.81[ASN][1000 genomes]
rs6554397	0.88[ASN][1000 genomes]
rs6554398	0.90[ASN][1000 genomes]
rs6554399	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6838948	0.88[ASN][1000 genomes]
rs6839845	0.80[ASN][1000 genomes]
rs6852110	0.82[ASN][1000 genomes]
rs6854420	0.88[ASN][1000 genomes]
rs6855212	0.86[ASN][1000 genomes]
rs729844	0.86[ASN][1000 genomes]
rs73242609	0.88[ASN][1000 genomes]
rs73242616	0.90[ASN][1000 genomes]
rs7666804	0.86[ASN][1000 genomes]
rs7667302	0.86[ASN][1000 genomes]
rs7680734	0.82[ASN][1000 genomes]
rs7685576	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7695970	0.88[ASN][1000 genomes]
rs781665	0.81[ASN][1000 genomes]
rs781666	0.81[ASN][1000 genomes]
rs781668	0.81[ASN][1000 genomes]
rs899632	0.86[ASN][1000 genomes]
rs9684742	0.86[ASN][1000 genomes]
rs9942208	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv1012287	chr4:57652778-57853485	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv1012125	chr4:57668229-57865803	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	esv3425352	chr4:57783591-57820951	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	esv1797793	chr4:57786450-57793425	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57776400-57789400	Weak transcription	Right Ventricle	heart
2	chr4:57777000-57795800	Weak transcription	A549	lung
3	chr4:57777000-57796600	Weak transcription	Fetal Brain Female	brain
4	chr4:57777000-57797000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr4:57777200-57793400	Weak transcription	HMEC	breast
6	chr4:57777200-57796600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:57777200-57796600	Weak transcription	Aorta	Aorta
8	chr4:57777200-57796800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr4:57777200-57797200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr4:57777600-57796000	Weak transcription	Brain Anterior Caudate	brain
11	chr4:57777600-57796000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr4:57777600-57796600	Weak transcription	Colonic Mucosa	Colon
13	chr4:57777600-57803200	Weak transcription	NHDF-Ad	bronchial
14	chr4:57777600-57805600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:57777600-57806000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr4:57778000-57791800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr4:57778000-57796000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr4:57778000-57796000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr4:57778000-57796600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr4:57778000-57797000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr4:57778200-57796200	Weak transcription	Brain Hippocampus Middle	brain
22	chr4:57778200-57796800	Weak transcription	NHLF	lung
23	chr4:57778400-57788600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr4:57778400-57795400	Weak transcription	HSMMtube	muscle
25	chr4:57778400-57796000	Weak transcription	Rectal Smooth Muscle	rectum
26	chr4:57778400-57800200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr4:57778400-57800200	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr4:57778400-57801000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr4:57778800-57795800	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr4:57779000-57804600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr4:57779200-57799200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr4:57779800-57789600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr4:57779800-57796000	Weak transcription	Small Intestine	intestine
34	chr4:57779800-57797600	Weak transcription	Fetal Brain Male	brain
35	chr4:57779800-57799600	Weak transcription	Right Atrium	heart
36	chr4:57780200-57793000	Strong transcription	Cortex derived primary cultured neurospheres	brain
37	chr4:57780400-57800400	Strong transcription	Fetal Thymus	thymus
38	chr4:57780800-57795600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr4:57780800-57808200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr4:57781000-57791200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr4:57781000-57796800	Weak transcription	Spleen	Spleen
42	chr4:57781000-57799600	Weak transcription	Psoas Muscle	Psoas
43	chr4:57781800-57801400	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr4:57782200-57788000	Weak transcription	NHEK	skin
45	chr4:57782200-57790800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr4:57782400-57792400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr4:57782400-57796000	Weak transcription	Hela-S3	cervix
48	chr4:57782800-57792600	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr4:57782800-57796800	Weak transcription	Pancreas	Pancrea
50	chr4:57783000-57787400	Strong transcription	H1 Cell Line	embryonic stem cell

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