Variant report

Variant	rs11737058
Chromosome Location	chr4:45086050-45086051
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10001028	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11725284	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12503507	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13103657	0.92[EUR][1000 genomes]
rs1355611	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1398266	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1512302	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1512308	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1512323	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1581096	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16857979	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1828600	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1828601	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1828602	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1913019	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs348493	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs348494	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs348496	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4295304	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6414674	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6831362	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6844273	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7660147	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7670865	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7680194	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7685861	0.92[EUR][1000 genomes]
rs7687383	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs963316	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs979578	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs979580	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs986722	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs996004	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9996542	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531944	chr4:44299343-45200700	Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1014327	chr4:44735209-45218149	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv878979	chr4:44871931-45102488	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv829919	chr4:45069901-45253808	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:45085000-45086200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:45085600-45086800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:45086000-45086200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr4:45086000-45087400	Enhancers	HMEC	breast

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