Variant report

Variant	rs979580
Chromosome Location	chr4:45127762-45127763
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10001028	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11725284	1.00[EUR][1000 genomes]
rs11737058	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12503507	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13103657	1.00[EUR][1000 genomes]
rs1355611	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1398266	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1512302	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1512308	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1512323	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1581096	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16857979	1.00[EUR][1000 genomes]
rs1828600	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1828601	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1828602	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1913019	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs348493	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs348494	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs348496	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4295304	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6414674	1.00[EUR][1000 genomes]
rs6831362	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6844273	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7660147	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7670865	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7680194	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7685861	1.00[EUR][1000 genomes]
rs7687383	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs963315	0.82[EUR][1000 genomes]
rs963316	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs979578	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs986722	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs996004	1.00[EUR][1000 genomes]
rs9996542	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531944	chr4:44299343-45200700	Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1014327	chr4:44735209-45218149	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv829919	chr4:45069901-45253808	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv594104	chr4:45105210-45665828	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:45125800-45174400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:45126800-45132800	Weak transcription	Stomach Mucosa	stomach
3	chr4:45127600-45128400	Enhancers	HUES48 Cell Line	embryonic stem cell

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