Variant report
| Variant | rs6414674 |
|---|---|
| Chromosome Location | chr4:45085471-45085472 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10001028 | 1.00[EUR][1000 genomes] |
| rs11725284 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11737058 | 0.83[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs12503507 | 1.00[EUR][1000 genomes] |
| rs13103657 | 1.00[EUR][1000 genomes] |
| rs1355611 | 1.00[EUR][1000 genomes] |
| rs1398266 | 1.00[EUR][1000 genomes] |
| rs1512302 | 1.00[EUR][1000 genomes] |
| rs1512308 | 1.00[EUR][1000 genomes] |
| rs1512323 | 1.00[EUR][1000 genomes] |
| rs1581096 | 0.94[EUR][1000 genomes] |
| rs16857979 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1828600 | 1.00[EUR][1000 genomes] |
| rs1828601 | 1.00[EUR][1000 genomes] |
| rs1828602 | 1.00[EUR][1000 genomes] |
| rs1913019 | 1.00[EUR][1000 genomes] |
| rs348493 | 0.94[EUR][1000 genomes] |
| rs348494 | 0.94[EUR][1000 genomes] |
| rs348496 | 0.94[EUR][1000 genomes] |
| rs4295304 | 1.00[EUR][1000 genomes] |
| rs6831362 | 0.97[EUR][1000 genomes] |
| rs6844273 | 1.00[EUR][1000 genomes] |
| rs7660147 | 1.00[EUR][1000 genomes] |
| rs7670865 | 1.00[EUR][1000 genomes] |
| rs7680194 | 1.00[EUR][1000 genomes] |
| rs7685861 | 1.00[EUR][1000 genomes] |
| rs7687383 | 1.00[EUR][1000 genomes] |
| rs963315 | 0.82[EUR][1000 genomes] |
| rs963316 | 1.00[EUR][1000 genomes] |
| rs979578 | 1.00[EUR][1000 genomes] |
| rs979580 | 1.00[EUR][1000 genomes] |
| rs986722 | 1.00[EUR][1000 genomes] |
| rs996004 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9996542 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv531944 | chr4:44299343-45200700 | Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv1014327 | chr4:44735209-45218149 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv878979 | chr4:44871931-45102488 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv829919 | chr4:45069901-45253808 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:45082800-45085600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr4:45084600-45085800 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
| 3 | chr4:45085000-45086200 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
