Variant report

Variant	rs11739939
Chromosome Location	chr5:120836062-120836063
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11742075	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11747653	0.89[ASN][1000 genomes]
rs1529488	0.89[ASN][1000 genomes]
rs35998292	0.89[ASN][1000 genomes]
rs6887408	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33642	chr5:120380525-120848760	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1023679	chr5:120689805-120890257	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv882803	chr5:120722413-120873947	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv882806	chr5:120741900-120917249	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv882807	chr5:120758647-120873947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:120835600-120836400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr5:120835600-120836600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr5:120835600-120836600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr5:120835600-120836600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr5:120835600-120836600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr5:120835600-120836600	Enhancers	Brain Germinal Matrix	brain
7	chr5:120835600-120836800	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr5:120835600-120837000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:120835600-120837000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr5:120835800-120836400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:120835800-120836600	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr5:120835800-120836600	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr5:120835800-120836600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr5:120836000-120836400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr5:120836000-120836400	Enhancers	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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