Variant report

Variant	rs11747653
Chromosome Location	chr5:120837855-120837856
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11739939	0.89[ASN][1000 genomes]
rs11742075	1.00[ASN][1000 genomes]
rs11953614	0.80[AFR][1000 genomes]
rs13158074	0.81[EUR][1000 genomes]
rs13158170	0.82[AMR][1000 genomes]
rs13177339	0.82[AMR][1000 genomes]
rs1529488	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17147921	0.81[AFR][1000 genomes]
rs34924396	0.96[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs35293138	0.92[AFR][1000 genomes]
rs35998292	1.00[ASN][1000 genomes]
rs6887408	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33642	chr5:120380525-120848760	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1023679	chr5:120689805-120890257	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv882803	chr5:120722413-120873947	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv882806	chr5:120741900-120917249	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv882807	chr5:120758647-120873947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv3367998	chr5:120836253-120839251	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:120836400-120839000	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr5:120836600-120838400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr5:120836600-120838600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:120836600-120838600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr5:120836600-120838600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr5:120836600-120838800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr5:120836600-120839000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr5:120836600-120839000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr5:120836600-120839400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr5:120837000-120839000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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