Variant report
| Variant | rs6887408 |
|---|---|
| Chromosome Location | chr5:120912345-120912346 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:7)
| rs_ID | r2[population] |
|---|---|
| rs11739939 | 0.89[ASN][1000 genomes] |
| rs11742075 | 1.00[ASN][1000 genomes] |
| rs11747653 | 1.00[ASN][1000 genomes] |
| rs1529488 | 1.00[ASN][1000 genomes] |
| rs34924396 | 0.89[ASN][1000 genomes] |
| rs35293138 | 0.88[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs35998292 | 0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv882806 | chr5:120741900-120917249 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv882809 | chr5:120911310-120952456 | Enhancers Weak transcription | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
