Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:114687817..114689333-chr5:114692740..114694646,2	MCF-7	breast:
2	chr5:114675524..114677443-chr5:114691985..114693681,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11241322	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11740600	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13162208	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17137667	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17137708	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17383865	0.81[EUR][1000 genomes]
rs2016888	0.87[EUR][1000 genomes]
rs2198712	0.88[EUR][1000 genomes]
rs2925170	0.81[EUR][1000 genomes]
rs2925172	0.81[EUR][1000 genomes]
rs2963747	0.81[EUR][1000 genomes]
rs2963749	0.82[EUR][1000 genomes]
rs2963758	0.81[EUR][1000 genomes]
rs2963765	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2964560	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35389100	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6887728	0.85[EUR][1000 genomes]
rs751485	0.86[EUR][1000 genomes]
rs7714928	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs897478	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114685600-114695800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr5:114690400-114695800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr5:114690800-114701400	Weak transcription	Hela-S3	cervix
4	chr5:114691200-114696000	Weak transcription	A549	lung
5	chr5:114691800-114694400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr5:114691800-114695400	Weak transcription	Stomach Mucosa	stomach
7	chr5:114692200-114694400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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