Variant report

Variant	rs2964560
Chromosome Location	chr5:114693121-114693122
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10477531	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs11241322	0.92[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[EUR][1000 genomes]
rs11740600	0.80[EUR][1000 genomes]
rs11745205	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17137667	0.80[EUR][1000 genomes]
rs17383865	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1812674	0.85[EUR][1000 genomes]
rs2016888	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs2198712	0.93[CEU][hapmap];0.82[CHB][hapmap]
rs2925170	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2925172	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2963747	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2963749	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2963758	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2963765	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs751485	0.92[CEU][hapmap];0.82[CHB][hapmap]
rs7714928	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs897478	0.93[CEU][hapmap];0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114685600-114695800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr5:114690400-114695800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr5:114690800-114701400	Weak transcription	Hela-S3	cervix
4	chr5:114691200-114696000	Weak transcription	A549	lung
5	chr5:114691800-114694400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr5:114691800-114695400	Weak transcription	Stomach Mucosa	stomach
7	chr5:114692200-114694400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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