Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11241322	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11740600	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11745205	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13162208	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17137667	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17137708	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17383865	0.82[EUR][1000 genomes]
rs2016888	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2198712	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2925170	0.82[EUR][1000 genomes]
rs2925172	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2963747	0.81[EUR][1000 genomes]
rs2963749	0.82[EUR][1000 genomes]
rs2963758	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2963765	0.89[EUR][1000 genomes]
rs2964560	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35389100	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6887728	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs751485	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs897478	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114690800-114701400	Weak transcription	Hela-S3	cervix
2	chr5:114694000-114697000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr5:114695200-114697000	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr5:114695400-114697400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:114695800-114697200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr5:114696400-114701400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:114696400-114701400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr5:114696400-114701400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr5:114696400-114701400	Weak transcription	NH-A	brain
10	chr5:114696400-114701400	Weak transcription	NHLF	lung
11	chr5:114696400-114701600	Weak transcription	Osteobl	bone
12	chr5:114696400-114701800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr5:114696600-114701400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr5:114696600-114701400	Weak transcription	HSMMtube	muscle
15	chr5:114696600-114701600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr5:114696600-114701600	Weak transcription	A549	lung
17	chr5:114696600-114701800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr5:114696800-114702000	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr5:114696800-114704200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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