Variant report

Variant	rs11748221
Chromosome Location	chr5:73970816-73970817
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:73968225..73971112-chr5:73973488..73976087,2	K562	blood:
2	chr5:73969331..73972056-chr5:73981357..73983781,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10515187	0.84[EUR][1000 genomes]
rs10805890	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs10942716	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10942717	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11738401	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11738782	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11738805	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11746583	0.92[EUR][1000 genomes]
rs11749435	0.92[EUR][1000 genomes]
rs11750605	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11750634	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11750747	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12233980	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12233981	1.00[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16872198	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17670514	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3776481	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3894712	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4460123	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs59514206	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59650752	0.83[ASN][1000 genomes]
rs6898989	1.00[CEU][hapmap];0.86[CHB][hapmap];0.99[EUR][1000 genomes]
rs7445920	0.93[CEU][hapmap];0.87[CHB][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:73948600-73971400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:73966600-73974600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:73966800-73980200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr5:73966800-73980600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr5:73968600-73971400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr5:73968600-73971800	Enhancers	HepG2	liver
7	chr5:73969400-73971400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:73969400-73972400	Weak transcription	Hela-S3	cervix
9	chr5:73969600-73973200	Weak transcription	Osteobl	bone
10	chr5:73969600-73975400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr5:73969600-73975800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr5:73969800-73972000	Weak transcription	Placenta	Placenta
13	chr5:73969800-73973200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr5:73969800-73973200	Weak transcription	NH-A	brain
15	chr5:73969800-73975800	Weak transcription	NHEK	skin
16	chr5:73969800-73978800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr5:73969800-73980600	Weak transcription	HMEC	breast
18	chr5:73969800-73980600	Weak transcription	HSMM	muscle
19	chr5:73969800-73980800	Weak transcription	NHLF	lung
20	chr5:73970000-73973000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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