Variant report

Variant	rs12233980
Chromosome Location	chr5:73975094-73975095
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:73973338..73977809-chr5:73979493..73982488,4	MCF-7	breast:
2	chr5:73973769..73978130-chr5:73979399..73982413,5	K562	blood:
3	chr5:73974217..73979066-chr5:73979317..73982643,5	K562	blood:
4	chr5:73968225..73971112-chr5:73973488..73976087,2	K562	blood:

Variant related genes	Relation type
ENSG00000049860	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10515187	0.83[EUR][1000 genomes]
rs10805890	1.00[CEU][hapmap];0.88[JPT][hapmap];0.92[EUR][1000 genomes]
rs10942716	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10942717	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11738401	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11738782	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11738805	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11746583	0.93[EUR][1000 genomes]
rs11748221	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11749103	0.85[ASN][1000 genomes]
rs11749435	0.93[EUR][1000 genomes]
rs11750605	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11750634	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11750747	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12233981	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16872198	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17670514	1.00[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3776481	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3894712	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4460123	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59514206	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59650752	0.89[ASN][1000 genomes]
rs6898989	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7445920	0.93[CEU][hapmap];0.93[CHB][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:73966800-73980200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:73966800-73980600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:73969600-73975400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr5:73969600-73975800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr5:73969800-73975800	Weak transcription	NHEK	skin
6	chr5:73969800-73978800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:73969800-73980600	Weak transcription	HMEC	breast
8	chr5:73969800-73980600	Weak transcription	HSMM	muscle
9	chr5:73969800-73980800	Weak transcription	NHLF	lung
10	chr5:73971800-73980200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr5:73972200-73975200	Weak transcription	HUVEC	blood vessel
12	chr5:73973400-73979400	Weak transcription	Placenta	Placenta
13	chr5:73973600-73975800	Weak transcription	Osteobl	bone
14	chr5:73973600-73978600	Weak transcription	NH-A	brain
15	chr5:73973800-73980600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr5:73975000-73975200	Enhancers	Fetal Intestine Small	intestine
17	chr5:73975000-73975200	Enhancers	Hela-S3	cervix

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