Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:73969331..73972056-chr5:73981357..73983781,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10515187	0.88[ASN][1000 genomes]
rs10805890	0.83[CHD][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs10942716	0.86[ASN][1000 genomes]
rs10942717	0.84[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs11738401	0.86[ASN][1000 genomes]
rs11738782	0.85[ASN][1000 genomes]
rs11738805	0.98[ASN][1000 genomes]
rs11746583	0.87[ASN][1000 genomes]
rs11747100	0.87[ASN][1000 genomes]
rs11747317	0.87[ASN][1000 genomes]
rs11748460	1.00[MKK][hapmap]
rs11749435	0.87[ASN][1000 genomes]
rs11750605	0.86[ASN][1000 genomes]
rs11750634	0.86[ASN][1000 genomes]
rs11750747	0.86[ASN][1000 genomes]
rs12233980	0.86[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs12233981	0.85[CHD][hapmap];0.94[JPT][hapmap];0.85[MEX][hapmap];0.85[ASN][1000 genomes]
rs16872198	0.92[ASN][1000 genomes]
rs17670514	0.84[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3776481	0.89[ASN][1000 genomes]
rs3894712	0.92[CHD][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs4460123	0.84[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.85[MEX][hapmap];0.94[ASN][1000 genomes]
rs59514206	0.85[ASN][1000 genomes]
rs6898989	0.84[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs7445920	0.81[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11749103	NSA2	cis	cerebellum	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:73966600-73974600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:73966800-73980200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:73966800-73980600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:73968600-73971800	Enhancers	HepG2	liver
5	chr5:73969400-73972400	Weak transcription	Hela-S3	cervix
6	chr5:73969600-73973200	Weak transcription	Osteobl	bone
7	chr5:73969600-73975400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr5:73969600-73975800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr5:73969800-73972000	Weak transcription	Placenta	Placenta
10	chr5:73969800-73973200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr5:73969800-73973200	Weak transcription	NH-A	brain
12	chr5:73969800-73975800	Weak transcription	NHEK	skin
13	chr5:73969800-73978800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr5:73969800-73980600	Weak transcription	HMEC	breast
15	chr5:73969800-73980600	Weak transcription	HSMM	muscle
16	chr5:73969800-73980800	Weak transcription	NHLF	lung
17	chr5:73970000-73973000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr5:73971400-73971800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr5:73971400-73971800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr5:73971400-73972000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr5:73971600-73971800	Enhancers	HUVEC	blood vessel

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