Variant report

Variant	rs17670514
Chromosome Location	chr5:73977645-73977646
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBL1XR1	chr5:73977576-73977707	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr5:73973338..73977809-chr5:73979493..73982488,4	MCF-7	breast:
2	chr5:73973769..73978130-chr5:73979399..73982413,5	K562	blood:
3	chr5:73974217..73979066-chr5:73979317..73982643,5	K562	blood:

Variant related genes	Relation type
HEXB	TF binding region
ENSG00000049860	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10515187	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10805890	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10942716	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10942717	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11738401	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11738782	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11738805	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11746583	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11747100	0.87[ASN][1000 genomes]
rs11747317	0.87[ASN][1000 genomes]
rs11748221	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11749103	0.95[ASN][1000 genomes]
rs11749435	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11750605	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11750634	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11750747	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12233980	1.00[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12233981	1.00[CEU][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16872198	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3776481	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3894712	1.00[CEU][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4460123	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59514206	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6898989	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7445920	0.93[CEU][hapmap];0.81[CHB][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:73966800-73980200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:73966800-73980600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:73969800-73978800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:73969800-73980600	Weak transcription	HMEC	breast
5	chr5:73969800-73980600	Weak transcription	HSMM	muscle
6	chr5:73969800-73980800	Weak transcription	NHLF	lung
7	chr5:73971800-73980200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr5:73973400-73979400	Weak transcription	Placenta	Placenta
9	chr5:73973600-73978600	Weak transcription	NH-A	brain
10	chr5:73973800-73980600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr5:73975200-73980200	Weak transcription	Spleen	Spleen
12	chr5:73976000-73980600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr5:73976200-73978800	Weak transcription	NHEK	skin
14	chr5:73976200-73980200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr5:73976200-73980600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr5:73976200-73980600	Weak transcription	Osteobl	bone
17	chr5:73976200-73981000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr5:73976400-73980000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr5:73976400-73980200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr5:73976400-73980200	Weak transcription	Hela-S3	cervix
21	chr5:73976800-73980600	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr5:73977400-73980800	Weak transcription	HSMMtube	muscle
23	chr5:73977600-73977800	Enhancers	Fetal Intestine Small	intestine
24	chr5:73977600-73978000	Enhancers	K562	blood

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