Variant report

Variant	rs11749563
Chromosome Location	chr7:16420362-16420363
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10805627	0.83[ASN][1000 genomes]
rs10941358	0.81[ASN][1000 genomes]
rs10941359	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11739400	0.88[ASN][1000 genomes]
rs11740897	0.85[ASN][1000 genomes]
rs11742904	0.81[ASN][1000 genomes]
rs11745980	0.88[ASN][1000 genomes]
rs11747548	0.87[ASN][1000 genomes]
rs11747900	0.87[ASN][1000 genomes]
rs11750837	0.89[ASN][1000 genomes]
rs11750840	0.89[ASN][1000 genomes]
rs12189078	0.85[ASN][1000 genomes]
rs12332088	0.85[ASN][1000 genomes]
rs12516955	0.85[ASN][1000 genomes]
rs12520944	0.88[ASN][1000 genomes]
rs12521063	0.88[ASN][1000 genomes]
rs1356433	0.82[ASN][1000 genomes]
rs1400854	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1517786	0.85[ASN][1000 genomes]
rs1589119	0.83[ASN][1000 genomes]
rs1996427	0.87[ASN][1000 genomes]
rs2176479	0.83[ASN][1000 genomes]
rs4242251	0.82[ASN][1000 genomes]
rs4257799	0.81[ASN][1000 genomes]
rs4343860	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4371784	0.89[ASN][1000 genomes]
rs4451075	0.85[ASN][1000 genomes]
rs4482927	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4516881	0.87[ASN][1000 genomes]
rs4516882	0.89[ASN][1000 genomes]
rs4541680	0.81[ASN][1000 genomes]
rs4594879	0.85[ASN][1000 genomes]
rs4608942	0.89[ASN][1000 genomes]
rs4618454	0.87[ASN][1000 genomes]
rs4869541	0.88[ASN][1000 genomes]
rs4869543	0.90[ASN][1000 genomes]
rs55708822	0.89[ASN][1000 genomes]
rs55732996	0.83[ASN][1000 genomes]
rs55742744	0.83[ASN][1000 genomes]
rs55849485	0.81[ASN][1000 genomes]
rs56007806	0.85[ASN][1000 genomes]
rs56051431	0.89[ASN][1000 genomes]
rs56051756	0.89[ASN][1000 genomes]
rs56100322	0.83[ASN][1000 genomes]
rs56412589	0.84[ASN][1000 genomes]
rs56832651	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59378089	0.87[ASN][1000 genomes]
rs59409868	0.87[ASN][1000 genomes]
rs59829323	0.89[ASN][1000 genomes]
rs60589722	0.83[ASN][1000 genomes]
rs61492379	0.85[ASN][1000 genomes]
rs62360907	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62360910	0.89[ASN][1000 genomes]
rs6451329	0.82[ASN][1000 genomes]
rs6451330	0.81[ASN][1000 genomes]
rs6451331	0.81[ASN][1000 genomes]
rs6451333	0.85[ASN][1000 genomes]
rs6451337	0.89[ASN][1000 genomes]
rs6451339	0.88[ASN][1000 genomes]
rs6863936	0.85[ASN][1000 genomes]
rs6868428	0.85[ASN][1000 genomes]
rs6884551	0.88[ASN][1000 genomes]
rs6884569	0.88[ASN][1000 genomes]
rs6885057	0.85[ASN][1000 genomes]
rs6885329	0.84[ASN][1000 genomes]
rs6887215	0.85[ASN][1000 genomes]
rs6887613	0.85[ASN][1000 genomes]
rs72743184	0.82[ASN][1000 genomes]
rs7702644	0.83[ASN][1000 genomes]
rs7703775	0.80[ASN][1000 genomes]
rs7725465	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv2759514	chr7:16236162-16527390	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1022388	chr7:16251992-16431864	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv2758105	chr7:16272822-16527390	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv2757215	chr7:16346139-16458474	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv508447	chr7:16360614-16446053	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1031019	chr7:16377519-16458474	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	nsv1028556	chr7:16404615-16440024	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv523408	chr7:16413481-16438357	Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv1034151	chr7:16415497-16578081	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16412600-16427000	Weak transcription	Adipose Nuclei	Adipose
2	chr7:16414400-16425400	Weak transcription	Aorta	Aorta
3	chr7:16415600-16423400	Weak transcription	Ovary	ovary
4	chr7:16417600-16436800	Weak transcription	Right Ventricle	heart

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