Variant report
Variant | rs56100322 |
---|---|
Chromosome Location | chr5:37651175-37651176 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10805627 | 0.81[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs10941353 | 0.81[EUR][1000 genomes] |
rs10941356 | 0.81[EUR][1000 genomes] |
rs10941358 | 0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs10941359 | 0.88[AMR][1000 genomes];0.96[ASN][1000 genomes] |
rs1126290 | 0.94[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs11739400 | 0.94[ASN][1000 genomes] |
rs11740897 | 0.81[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs11742904 | 0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs11745980 | 0.94[ASN][1000 genomes] |
rs11747548 | 0.95[ASN][1000 genomes] |
rs11747900 | 0.96[ASN][1000 genomes] |
rs11748123 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs11749563 | 0.83[ASN][1000 genomes] |
rs11750837 | 0.91[ASN][1000 genomes] |
rs11750840 | 0.91[ASN][1000 genomes] |
rs11949124 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs12152831 | 0.83[EUR][1000 genomes] |
rs12189078 | 0.87[ASN][1000 genomes] |
rs12332088 | 0.82[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs12516955 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs12519307 | 0.80[EUR][1000 genomes] |
rs12520944 | 0.94[ASN][1000 genomes] |
rs12521063 | 0.94[ASN][1000 genomes] |
rs12652658 | 0.83[EUR][1000 genomes] |
rs12655908 | 0.95[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs1356433 | 0.82[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs1400854 | 0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes] |
rs1517786 | 0.83[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs1517788 | 0.81[EUR][1000 genomes] |
rs1589116 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs1589119 | 0.82[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1812818 | 0.81[EUR][1000 genomes] |
rs1996427 | 0.96[ASN][1000 genomes] |
rs2176478 | 0.95[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs2176479 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4242251 | 0.84[ASN][1000 genomes] |
rs4257799 | 0.83[ASN][1000 genomes] |
rs4343860 | 0.92[ASN][1000 genomes] |
rs4371784 | 0.91[ASN][1000 genomes] |
rs4451075 | 0.87[ASN][1000 genomes] |
rs4482927 | 0.92[ASN][1000 genomes] |
rs4516881 | 0.92[ASN][1000 genomes] |
rs4516882 | 0.91[ASN][1000 genomes] |
rs4541680 | 0.82[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs4582305 | 0.83[ASN][1000 genomes] |
rs4594879 | 0.87[ASN][1000 genomes] |
rs4608942 | 0.91[ASN][1000 genomes] |
rs4618454 | 0.89[ASN][1000 genomes] |
rs4869440 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs4869530 | 0.92[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs4869538 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs4869541 | 0.94[ASN][1000 genomes] |
rs4869543 | 0.89[ASN][1000 genomes] |
rs55708822 | 0.91[ASN][1000 genomes] |
rs55732996 | 0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs55742744 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs55794983 | 0.81[EUR][1000 genomes] |
rs55849485 | 0.83[ASN][1000 genomes] |
rs55960353 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs56007806 | 0.97[ASN][1000 genomes] |
rs56044522 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs56051431 | 0.91[ASN][1000 genomes] |
rs56051756 | 0.91[ASN][1000 genomes] |
rs56114410 | 0.81[EUR][1000 genomes] |
rs56288111 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs56412589 | 0.84[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs56832651 | 0.86[AMR][1000 genomes];0.96[ASN][1000 genomes] |
rs57015453 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs57817568 | 0.81[EUR][1000 genomes] |
rs59378089 | 0.89[ASN][1000 genomes] |
rs59409868 | 0.96[ASN][1000 genomes] |
rs59829323 | 0.91[ASN][1000 genomes] |
rs60589722 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs61435914 | 0.95[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs61492379 | 0.87[ASN][1000 genomes] |
rs62359033 | 0.81[EUR][1000 genomes] |
rs62359042 | 0.80[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs62359058 | 0.95[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs62360876 | 0.81[EUR][1000 genomes] |
rs62360907 | 0.86[AFR][1000 genomes];0.87[ASN][1000 genomes] |
rs62360910 | 0.91[ASN][1000 genomes] |
rs6451329 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs6451330 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs6451331 | 0.82[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs6451333 | 0.82[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6451337 | 0.91[ASN][1000 genomes] |
rs6451339 | 0.90[ASN][1000 genomes] |
rs6863936 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs6864924 | 0.91[ASN][1000 genomes] |
rs6868428 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6884551 | 0.91[ASN][1000 genomes] |
rs6884569 | 0.91[ASN][1000 genomes] |
rs6885057 | 0.82[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs6885329 | 0.82[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs6887215 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6887613 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs72743184 | 0.84[ASN][1000 genomes] |
rs7702644 | 0.81[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7703775 | 0.83[ASN][1000 genomes] |
rs7725465 | 0.94[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1026554 | chr5:37112133-37734859 | Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 45 gene(s) | inside rSNPs | diseases |
2 | nsv537726 | chr5:37112133-37734859 | Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 45 gene(s) | inside rSNPs | diseases |
3 | nsv949716 | chr5:37179341-37967352 | Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 58 gene(s) | inside rSNPs | diseases |
4 | nsv1015983 | chr5:37240827-37666601 | Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 40 gene(s) | inside rSNPs | diseases |
5 | nsv1023871 | chr5:37330018-37804744 | Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
6 | nsv537729 | chr5:37330018-37804744 | Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
7 | nsv432744 | chr5:37374124-37743077 | ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
8 | nsv1034094 | chr5:37406859-37666704 | Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
9 | nsv537731 | chr5:37406859-37666704 | ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
10 | nsv597846 | chr5:37430215-37813591 | Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
11 | nsv880890 | chr5:37443079-37681646 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
12 | nsv1030250 | chr5:37478163-37734859 | ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
13 | nsv881383 | chr5:37485316-37773877 | Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:37647000-37665400 | Weak transcription | Primary B cells from cord blood | blood |
2 | chr5:37648000-37666000 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
3 | chr5:37649600-37652000 | Weak transcription | Primary T killer memory cells from peripheral blood | blood |
4 | chr5:37649600-37654200 | Weak transcription | Primary T cells from cord blood | blood |