Variant report

Variant	rs61435914
Chromosome Location	chr5:37607341-37607342
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs10062316	0.96[ASN][1000 genomes]
rs1013398	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10473055	0.97[ASN][1000 genomes]
rs10941344	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10941345	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10941347	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10941348	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10941349	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10941350	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10941351	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10941352	0.91[ASN][1000 genomes]
rs10941353	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10941356	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10941358	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10941359	0.87[AMR][1000 genomes]
rs1126290	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11741504	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11742904	0.83[AMR][1000 genomes]
rs11748123	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11750256	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11949124	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11950295	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11954727	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11957813	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12152831	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12187311	0.85[ASN][1000 genomes]
rs12188106	0.85[ASN][1000 genomes]
rs12516955	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12519307	0.91[ASN][1000 genomes]
rs12652658	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12653047	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12654893	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12655908	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12658877	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1400851	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1400853	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1400854	0.88[AMR][1000 genomes]
rs1517785	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1517788	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1533521	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1554278	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1589116	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16903691	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1812818	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2088077	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2101786	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2176478	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2176479	0.83[AMR][1000 genomes]
rs4357062	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4869438	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4869439	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4869440	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4869527	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4869530	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4869532	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4869533	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4869535	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4869536	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4869537	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4869538	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs498254	0.87[ASN][1000 genomes]
rs55732996	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55742744	0.83[AMR][1000 genomes]
rs55794983	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55960353	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56044522	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56100322	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56114410	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56145766	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56234447	0.93[ASN][1000 genomes]
rs56288111	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56832651	0.85[AMR][1000 genomes]
rs57015453	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57817568	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58969082	0.85[ASN][1000 genomes]
rs59696230	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60589722	0.83[AMR][1000 genomes]
rs62359033	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62359036	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62359042	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62359058	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62360876	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6451326	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6451329	0.83[AMR][1000 genomes]
rs6451330	0.83[AMR][1000 genomes]
rs6863936	0.83[AMR][1000 genomes]
rs6865231	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6868428	0.83[AMR][1000 genomes]
rs6871844	0.89[ASN][1000 genomes]
rs6872681	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6874891	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6876171	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6879890	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6887215	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6887613	0.83[AMR][1000 genomes]
rs6889616	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7704853	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7705015	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7705089	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7713017	0.94[ASN][1000 genomes]
rs7715482	0.93[ASN][1000 genomes]
rs7718557	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7727807	0.93[ASN][1000 genomes]
rs9292656	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9292662	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026554	chr5:37112133-37734859	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv537726	chr5:37112133-37734859	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv949716	chr5:37179341-37967352	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
4	nsv1015983	chr5:37240827-37666601	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
5	nsv1021284	chr5:37264275-37630188	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv1023871	chr5:37330018-37804744	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv537729	chr5:37330018-37804744	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv432744	chr5:37374124-37743077	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv1034094	chr5:37406859-37666704	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv537731	chr5:37406859-37666704	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv597846	chr5:37430215-37813591	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv880890	chr5:37443079-37681646	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv1030250	chr5:37478163-37734859	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv881383	chr5:37485316-37773877	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37540000-37621000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:37555000-37616200	Weak transcription	Aorta	Aorta
3	chr5:37572200-37620600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr5:37575600-37611600	Weak transcription	Pancreas	Pancrea
5	chr5:37576000-37607800	Weak transcription	Left Ventricle	heart
6	chr5:37588800-37628000	Weak transcription	Ovary	ovary
7	chr5:37600000-37608000	Weak transcription	Fetal Stomach	stomach
8	chr5:37600000-37620600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr5:37600800-37627200	Weak transcription	Fetal Intestine Small	intestine
10	chr5:37601400-37614800	Weak transcription	HSMM	muscle
11	chr5:37601400-37618000	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr5:37601600-37607800	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr5:37601600-37608000	Weak transcription	Primary T cells from cord blood	blood
14	chr5:37601600-37611000	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr5:37601600-37620800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr5:37601600-37628600	Weak transcription	Brain Hippocampus Middle	brain
17	chr5:37601800-37607800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr5:37601800-37607800	Weak transcription	Primary B cells from peripheral blood	blood
19	chr5:37601800-37614600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr5:37601800-37614800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr5:37601800-37620600	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr5:37602000-37607600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr5:37602000-37607800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr5:37602000-37630800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr5:37602200-37626200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr5:37602600-37612000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr5:37602800-37628000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr5:37603000-37621800	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr5:37603600-37607800	Weak transcription	Primary B cells from cord blood	blood
30	chr5:37603600-37613400	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr5:37603600-37627600	Weak transcription	Liver	Liver
32	chr5:37603600-37628000	Weak transcription	Thymus	Thymus
33	chr5:37603800-37613400	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr5:37604000-37614200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr5:37604000-37627200	Weak transcription	Lung	lung
36	chr5:37604600-37618000	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr5:37604800-37612200	Weak transcription	Small Intestine	intestine
38	chr5:37604800-37625400	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr5:37604800-37630400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr5:37605000-37614800	Weak transcription	Rectal Smooth Muscle	rectum
41	chr5:37605000-37628800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr5:37605400-37622600	Weak transcription	Fetal Muscle Leg	muscle
43	chr5:37605400-37628800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr5:37605600-37607800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr5:37605600-37607800	Weak transcription	Fetal Muscle Trunk	muscle
46	chr5:37605800-37607800	Weak transcription	Adipose Nuclei	Adipose
47	chr5:37606000-37608000	Weak transcription	Duodenum Mucosa	Duodenum
48	chr5:37606000-37610600	Weak transcription	Dnd41	blood
49	chr5:37606200-37614200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr5:37606200-37629000	Weak transcription	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links