The 2.0 version of rSNPBase

Variant report

Variant rs1400853
Chromosome Location chr5:37605048-37605049
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:37540000-37621000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr5:37555000-37616200 Weak transcription Aorta Aorta
3 chr5:37572200-37620600 Weak transcription Primary T helper naive cells fromperipheralblood blood
4 chr5:37575600-37611600 Weak transcription Pancreas Pancrea
5 chr5:37576000-37607800 Weak transcription Left Ventricle heart
6 chr5:37588800-37628000 Weak transcription Ovary ovary
7 chr5:37600000-37608000 Weak transcription Fetal Stomach stomach
8 chr5:37600000-37620600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
9 chr5:37600800-37627200 Weak transcription Fetal Intestine Small intestine
10 chr5:37601400-37614800 Weak transcription HSMM muscle
11 chr5:37601400-37618000 Weak transcription Primary T cells fromperipheralblood blood
12 chr5:37601600-37607800 Weak transcription Monocytes-CD14+_RO01746 blood
13 chr5:37601600-37608000 Weak transcription Primary T cells from cord blood blood
14 chr5:37601600-37611000 Weak transcription Brain Inferior Temporal Lobe brain
15 chr5:37601600-37620800 Weak transcription Primary hematopoietic stem cells blood
16 chr5:37601600-37628600 Weak transcription Brain Hippocampus Middle brain
17 chr5:37601800-37607200 Weak transcription Primary T helper cells PMA-I stimulated --
18 chr5:37601800-37607800 Weak transcription Breast Myoepithelial Primary Cells Breast
19 chr5:37601800-37607800 Weak transcription Primary B cells from peripheral blood blood
20 chr5:37601800-37614600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
21 chr5:37601800-37614800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
22 chr5:37601800-37620600 Weak transcription Primary T helper cells fromperipheralblood blood
23 chr5:37602000-37607600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
24 chr5:37602000-37607800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
25 chr5:37602000-37630800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
26 chr5:37602200-37626200 Weak transcription Primary hematopoietic stem cells short term culture blood
27 chr5:37602600-37612000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
28 chr5:37602800-37628000 Weak transcription Sigmoid Colon Sigmoid Colon
29 chr5:37603000-37606800 Weak transcription Rectal Mucosa Donor 31 rectum
30 chr5:37603000-37621800 Weak transcription Primary monocytes fromperipheralblood blood
31 chr5:37603600-37607800 Weak transcription Primary B cells from cord blood blood
32 chr5:37603600-37613400 Weak transcription Skeletal Muscle Male skeletal muscle
33 chr5:37603600-37627600 Weak transcription Liver Liver
34 chr5:37603600-37628000 Weak transcription Thymus Thymus
35 chr5:37603800-37613400 Weak transcription Skeletal Muscle Female skeletal muscle
36 chr5:37604000-37614200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
37 chr5:37604000-37627200 Weak transcription Lung lung
38 chr5:37604400-37605400 Enhancers Colon Smooth Muscle Colon
39 chr5:37604600-37618000 Weak transcription Duodenum Smooth Muscle Duodenum
40 chr5:37604800-37612200 Weak transcription Small Intestine intestine
41 chr5:37604800-37625400 Weak transcription Rectal Mucosa Donor 29 rectum
42 chr5:37604800-37630400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
43 chr5:37605000-37607000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
44 chr5:37605000-37614800 Weak transcription Rectal Smooth Muscle rectum
45 chr5:37605000-37628800 Weak transcription Primary T regulatory cells fromperipheralblood blood

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Last update: Aug 31, 2015