Variant report

Variant	rs6884569
Chromosome Location	chr5:37680063-37680064
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs10062316	0.81[CEU][hapmap]
rs1013398	0.84[CEU][hapmap]
rs10805627	0.89[ASN][1000 genomes]
rs10941344	0.81[CEU][hapmap]
rs10941345	0.81[CEU][hapmap];0.83[CHB][hapmap]
rs10941347	0.84[CEU][hapmap];0.83[CHB][hapmap]
rs10941348	0.81[CEU][hapmap]
rs10941351	0.84[CEU][hapmap];0.83[CHB][hapmap]
rs10941352	0.84[CEU][hapmap]
rs10941353	0.92[CEU][hapmap]
rs10941356	0.85[CEU][hapmap]
rs10941358	0.90[ASN][1000 genomes]
rs10941359	0.81[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap];0.96[ASN][1000 genomes]
rs11739400	0.94[ASN][1000 genomes]
rs11740897	0.94[ASN][1000 genomes]
rs11742904	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs11745953	0.83[JPT][hapmap]
rs11745980	0.94[ASN][1000 genomes]
rs11747548	1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs11747900	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11749563	0.88[ASN][1000 genomes]
rs11750837	0.98[ASN][1000 genomes]
rs11750840	0.98[ASN][1000 genomes]
rs11950295	0.84[CEU][hapmap];0.83[CHB][hapmap]
rs11954727	0.81[CEU][hapmap]
rs11957813	0.81[CEU][hapmap]
rs12152831	0.83[CHB][hapmap]
rs12189078	0.94[ASN][1000 genomes]
rs12332088	0.94[ASN][1000 genomes]
rs12516955	1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs12520944	1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs12521063	1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap];0.94[ASN][1000 genomes]
rs12654893	0.81[CEU][hapmap];0.83[CHB][hapmap]
rs12655908	0.83[CHB][hapmap]
rs1356433	0.81[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs1400851	0.81[CEU][hapmap];0.83[CHB][hapmap]
rs1400854	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs1517785	0.81[CEU][hapmap]
rs1517786	0.81[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs1517788	0.81[CEU][hapmap]
rs1554278	0.81[CEU][hapmap]
rs1589119	0.89[ASN][1000 genomes]
rs1996427	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2088077	0.83[CHB][hapmap]
rs2101786	0.83[CHB][hapmap]
rs2176479	0.89[ASN][1000 genomes]
rs4242251	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4257799	0.90[ASN][1000 genomes]
rs4343860	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4371784	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4451075	0.94[ASN][1000 genomes]
rs4482927	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4516881	0.99[ASN][1000 genomes]
rs4516882	0.98[ASN][1000 genomes]
rs4541680	0.89[ASN][1000 genomes]
rs4582305	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4594879	0.94[ASN][1000 genomes]
rs4608942	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4618454	0.96[ASN][1000 genomes]
rs4869438	0.81[CEU][hapmap]
rs4869439	0.81[CEU][hapmap]
rs4869530	0.83[CHB][hapmap]
rs4869535	0.84[CEU][hapmap];0.83[CHB][hapmap]
rs4869538	0.83[CHB][hapmap]
rs4869541	0.94[ASN][1000 genomes]
rs4869543	0.96[ASN][1000 genomes]
rs55708822	0.98[ASN][1000 genomes]
rs55732996	0.91[ASN][1000 genomes]
rs55742744	0.91[ASN][1000 genomes]
rs55849485	0.90[ASN][1000 genomes]
rs56007806	0.94[ASN][1000 genomes]
rs56051431	0.98[ASN][1000 genomes]
rs56051756	0.98[ASN][1000 genomes]
rs56100322	0.91[ASN][1000 genomes]
rs56412589	0.90[ASN][1000 genomes]
rs56832651	0.93[ASN][1000 genomes]
rs59378089	0.96[ASN][1000 genomes]
rs59409868	0.93[ASN][1000 genomes]
rs59829323	0.98[ASN][1000 genomes]
rs60589722	0.90[ASN][1000 genomes]
rs61492379	0.94[ASN][1000 genomes]
rs62360907	0.93[ASN][1000 genomes]
rs62360910	0.98[ASN][1000 genomes]
rs6451329	0.91[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs6451330	0.90[ASN][1000 genomes]
rs6451331	0.81[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs6451333	1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs6451337	0.98[ASN][1000 genomes]
rs6451339	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6863936	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs6864924	0.83[ASN][1000 genomes]
rs6868428	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs6874891	0.84[CEU][hapmap];0.83[CHB][hapmap]
rs6884551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6885057	0.81[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs6885329	0.90[ASN][1000 genomes]
rs6887215	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.94[ASN][1000 genomes]
rs6887613	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs6889616	0.81[CEU][hapmap]
rs72743184	0.91[ASN][1000 genomes]
rs7702644	0.89[ASN][1000 genomes]
rs7703775	0.90[ASN][1000 genomes]
rs7713017	0.81[CEU][hapmap]
rs7718557	0.81[CEU][hapmap]
rs7725465	0.94[ASN][1000 genomes]
rs7727807	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026554	chr5:37112133-37734859	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv537726	chr5:37112133-37734859	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv949716	chr5:37179341-37967352	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
4	nsv1023871	chr5:37330018-37804744	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv537729	chr5:37330018-37804744	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv432744	chr5:37374124-37743077	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv597846	chr5:37430215-37813591	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv880890	chr5:37443079-37681646	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1030250	chr5:37478163-37734859	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv881383	chr5:37485316-37773877	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37673000-37684800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:37680000-37680200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:37680000-37680200	Enhancers	Aorta	Aorta
4	chr5:37680000-37680600	Enhancers	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links