Variant report

Variant	rs11752276
Chromosome Location	chr6:12301636-12301637
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10947935	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10947946	0.85[CEU][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11755836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11757019	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16872608	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17765653	0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs2032549	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4379286	0.80[JPT][hapmap]
rs4711654	0.84[CHB][hapmap]
rs4714383	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs4714384	0.87[CHB][hapmap];0.90[JPT][hapmap]
rs4714414	0.86[CEU][hapmap];0.82[CHB][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4714419	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62389535	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62389538	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6458193	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs6921790	0.84[JPT][hapmap]
rs9357344	0.86[CEU][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9369245	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9369246	0.92[CEU][hapmap];0.84[CHB][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9381013	0.86[CEU][hapmap];0.84[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9381015	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs9381035	0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508394	chr6:12285464-12386745	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv525684	chr6:12301462-12307264	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12296600-12314400	Weak transcription	Spleen	Spleen
2	chr6:12297200-12311200	Weak transcription	HUVEC	blood vessel
3	chr6:12298200-12302600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:12298200-12303200	Weak transcription	Fetal Intestine Small	intestine
5	chr6:12298200-12305600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr6:12298600-12304000	Weak transcription	NHEK	skin
7	chr6:12300200-12303200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:12300600-12302800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:12300800-12304200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:12301200-12302400	Strong transcription	A549	lung

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