Variant report

Variant	rs9357344
Chromosome Location	chr6:12323294-12323295
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:12012173..12014577-chr6:12323269..12325168,2	MCF-7	breast:
2	chr6:12286229..12288972-chr6:12321405..12325827,4	MCF-7	breast:
3	chr6:12299143..12301342-chr6:12323283..12325161,2	MCF-7	breast:
4	chr6:12315560..12317298-chr6:12323105..12324683,2	MCF-7	breast:
5	chr6:12322236..12325054-chr6:12326610..12329434,2	K562	blood:
6	chr6:12302992..12304861-chr6:12320967..12324603,3	MCF-7	breast:
7	chr6:12289159..12293070-chr6:12321878..12326678,5	MCF-7	breast:
8	chr6:12321927..12325444-chr6:12488868..12492076,3	MCF-7	breast:
9	chr6:12289263..12293878-chr6:12323003..12327079,6	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10947935	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10947946	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11752276	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11755836	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11757019	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16872608	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17765653	0.83[CHB][hapmap]
rs2032549	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4711654	0.96[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4714414	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4714419	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4714429	0.85[CEU][hapmap];0.82[CHB][hapmap];0.80[ASN][1000 genomes]
rs62389535	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62389538	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9369245	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9369246	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9381013	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9381033	0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508394	chr6:12285464-12386745	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12315200-12327800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:12319200-12324600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:12319400-12324200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:12319400-12324400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:12319400-12324400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:12319400-12325600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:12319600-12324400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:12319800-12324400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:12320000-12324800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:12322400-12325400	Enhancers	Fetal Intestine Large	intestine
11	chr6:12322400-12325400	Enhancers	Fetal Intestine Small	intestine
12	chr6:12322600-12324600	Enhancers	A549	lung
13	chr6:12322600-12325400	Enhancers	HepG2	liver
14	chr6:12323000-12323400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:12323000-12325400	Enhancers	Stomach Mucosa	stomach
16	chr6:12323200-12323800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:12323200-12324400	Weak transcription	Duodenum Mucosa	Duodenum
18	chr6:12323200-12325800	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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