Variant report

Variant	rs2032549
Chromosome Location	chr6:12309813-12309814
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10947935	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10947946	0.98[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11752276	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11755836	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11757019	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16872608	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17765653	0.86[ASN][1000 genomes]
rs4714414	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4714419	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62389535	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62389538	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9357344	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9369245	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9369246	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9381013	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508394	chr6:12285464-12386745	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12296600-12314400	Weak transcription	Spleen	Spleen
2	chr6:12297200-12311200	Weak transcription	HUVEC	blood vessel
3	chr6:12305400-12311400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:12309400-12310000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:12309600-12311200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:12309600-12311800	Active TSS	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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