Variant report

Variant	rs11752545
Chromosome Location	chr6:15763042-15763043
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13191380	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17475195	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34242415	0.81[EUR][1000 genomes]
rs375310	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66463311	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7749603	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7768219	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15756200-15763600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:15759200-15770000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:15759800-15763600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr6:15759800-15764200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:15761600-15763200	Weak transcription	Fetal Intestine Large	intestine
6	chr6:15762200-15763400	Weak transcription	Fetal Intestine Small	intestine
7	chr6:15762200-15764000	Weak transcription	Stomach Mucosa	stomach
8	chr6:15762200-15782000	Weak transcription	Pancreas	Pancrea
9	chr6:15762400-15763400	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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