Variant report

Variant	rs13191380
Chromosome Location	chr6:15759538-15759539
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11752545	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11756689	1.00[ASN][1000 genomes]
rs17475195	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34242415	0.81[EUR][1000 genomes]
rs375310	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66463311	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7749603	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7768219	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15755400-15760000	Weak transcription	Pancreas	Pancrea
2	chr6:15756200-15763600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:15759000-15759600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:15759200-15770000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:15759400-15759600	ZNF genes & repeats	Esophagus	oesophagus
6	chr6:15759400-15759800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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