Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:15749973..15753066-chr6:15759762..15763032,3	MCF-7	breast:
2	chr6:15750377..15752176-chr6:15753133..15755816,2	K562	blood:
3	chr6:15745202..15755569-chr6:16127641..16133691,11	K562	blood:
4	chr6:15749337..15756995-chr6:16127743..16131944,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11751763	0.83[EUR][1000 genomes]
rs11752545	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11753586	0.81[EUR][1000 genomes]
rs13191380	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13217270	0.82[AMR][1000 genomes]
rs17473838	1.00[CHD][hapmap];0.85[MEX][hapmap]
rs2181435	0.81[EUR][1000 genomes]
rs34030405	0.83[EUR][1000 genomes]
rs34080473	0.82[EUR][1000 genomes]
rs34242415	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34669273	0.83[EUR][1000 genomes]
rs35110594	0.83[EUR][1000 genomes]
rs35835933	0.83[EUR][1000 genomes]
rs375310	0.91[ASW][hapmap];0.88[CEU][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.92[LWK][hapmap];0.93[MEX][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56135160	0.81[EUR][1000 genomes]
rs6459413	0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs66463311	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6906528	1.00[CHD][hapmap];0.85[MEX][hapmap]
rs6937887	1.00[CHD][hapmap]
rs6941398	0.85[MEX][hapmap]
rs7738190	1.00[CHD][hapmap];0.86[MEX][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs7739825	0.83[EUR][1000 genomes]
rs7749603	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7760793	1.00[CHD][hapmap];0.86[MEX][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs7768219	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9283925	1.00[CHD][hapmap]
rs9476899	1.00[CHD][hapmap]
rs977746	0.85[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17475195	RNF182	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15746000-15755200	Weak transcription	H9 Cell Line	embryonic stem cell

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