Variant report

Variant	rs11753586
Chromosome Location	chr6:15756520-15756521
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15740904..15747364-chr6:15754114..15758056,5	K562	blood:
2	chr6:15749337..15756995-chr6:16127743..16131944,10	MCF-7	breast:
3	chr6:15755559..15757788-chr6:15768543..15770822,3	K562	blood:
4	chr6:15743873..15748458-chr6:15751737..15757129,6	MCF-7	breast:
5	chr6:15745864..15748782-chr6:15755149..15758056,3	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11751763	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759386	0.84[EUR][1000 genomes]
rs13199464	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16876746	1.00[ASN][1000 genomes]
rs17475195	0.81[EUR][1000 genomes]
rs1927582	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1927583	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1927584	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2181435	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2206341	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34030405	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34080473	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34669273	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35110594	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35835933	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36212519	1.00[ASN][1000 genomes]
rs374876	0.86[EUR][1000 genomes]
rs41413446	1.00[ASN][1000 genomes]
rs441539	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs4605871	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs55638296	1.00[ASN][1000 genomes]
rs55974491	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56135160	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56170994	1.00[ASN][1000 genomes]
rs56213329	1.00[ASN][1000 genomes]
rs56328138	1.00[ASN][1000 genomes]
rs6459413	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66463311	0.80[EUR][1000 genomes]
rs6913914	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6914558	1.00[ASN][1000 genomes]
rs6918979	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs72823461	1.00[ASN][1000 genomes]
rs73724483	1.00[ASN][1000 genomes]
rs7738190	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739825	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749603	0.81[EUR][1000 genomes]
rs7760793	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768219	0.81[EUR][1000 genomes]
rs7772242	1.00[ASN][1000 genomes]
rs7776332	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15754400-15756600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:15755000-15756600	Enhancers	Liver	Liver
3	chr6:15755400-15758800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:15755400-15759000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:15755400-15760000	Weak transcription	Pancreas	Pancrea
6	chr6:15755800-15756600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:15755800-15756600	Enhancers	Adipose Nuclei	Adipose
8	chr6:15756200-15763600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr6:15756400-15756600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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