Variant report

Variant	rs13199464
Chromosome Location	chr6:15791995-15791996
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15788511..15792316-chr6:15794070..15797091,4	K562	blood:
2	chr6:15784886..15786712-chr6:15791467..15793235,2	K562	blood:
3	chr6:15789517..15794468-chr6:16128845..16131804,5	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11751763	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753586	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13200544	0.82[EUR][1000 genomes]
rs16876746	1.00[ASN][1000 genomes]
rs1927582	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1927583	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1927584	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2181435	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2206341	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34030405	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34080473	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34242415	0.81[EUR][1000 genomes]
rs34669273	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35110594	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35835933	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36212519	1.00[ASN][1000 genomes]
rs41413446	1.00[ASN][1000 genomes]
rs441539	0.89[CEU][hapmap]
rs4605871	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs55638296	1.00[ASN][1000 genomes]
rs55974491	1.00[ASN][1000 genomes]
rs56135160	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56170994	1.00[ASN][1000 genomes]
rs56213329	1.00[ASN][1000 genomes]
rs56328138	1.00[ASN][1000 genomes]
rs6459413	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913914	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6914558	1.00[ASN][1000 genomes]
rs6918979	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs72823461	1.00[ASN][1000 genomes]
rs73724483	1.00[ASN][1000 genomes]
rs7738190	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739825	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760793	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772242	1.00[ASN][1000 genomes]
rs7776332	1.00[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15790600-15792200	Enhancers	Fetal Brain Female	brain
2	chr6:15790600-15793600	Enhancers	Fetal Intestine Small	intestine
3	chr6:15790600-15794600	Enhancers	Fetal Intestine Large	intestine
4	chr6:15790800-15792200	Enhancers	Fetal Brain Male	brain
5	chr6:15790800-15793800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr6:15791000-15792000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:15791000-15792000	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr6:15791000-15792400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:15791000-15793800	Enhancers	Pancreas	Pancrea
10	chr6:15791000-15796400	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr6:15791000-15798000	Enhancers	Fetal Muscle Leg	muscle
12	chr6:15791200-15792000	Enhancers	Fetal Kidney	kidney
13	chr6:15791200-15792000	Weak transcription	Psoas Muscle	Psoas
14	chr6:15791200-15792000	Enhancers	Stomach Mucosa	stomach
15	chr6:15791200-15792800	Enhancers	K562	blood
16	chr6:15791200-15793200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:15791200-15793800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:15791400-15792000	Weak transcription	Gastric	stomach
19	chr6:15791400-15792200	Flanking Active TSS	HepG2	liver
20	chr6:15791400-15794400	Enhancers	HMEC	breast
21	chr6:15791600-15792200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:15791600-15794600	Enhancers	HSMMtube	muscle
23	chr6:15791600-15796400	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr6:15791800-15792000	Enhancers	Aorta	Aorta
25	chr6:15791800-15792200	Enhancers	Placenta	Placenta
26	chr6:15791800-15792200	Enhancers	Rectal Mucosa Donor 29	rectum
27	chr6:15791800-15792200	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr6:15791800-15792600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr6:15791800-15793800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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