Variant report

Variant	rs6913914
Chromosome Location	chr6:15771988-15771989
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15769944..15772449-chr6:16127931..16130991,3	K562	blood:
2	chr6:15767905..15772449-chr6:16128086..16131802,6	K562	blood:
3	chr6:15760446..15762899-chr6:15770355..15772720,2	K562	blood:
4	chr6:15767469..15773334-chr6:16127835..16130840,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11751763	1.00[ASN][1000 genomes]
rs11753586	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13199464	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16876746	1.00[ASN][1000 genomes]
rs1927582	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1927583	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1927584	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2181435	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2206341	1.00[ASN][1000 genomes]
rs34030405	1.00[ASN][1000 genomes]
rs34080473	1.00[ASN][1000 genomes]
rs34669273	1.00[ASN][1000 genomes]
rs35110594	1.00[ASN][1000 genomes]
rs35835933	1.00[ASN][1000 genomes]
rs36212519	1.00[ASN][1000 genomes]
rs41413446	1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs443804	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs4605871	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55638296	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55974491	1.00[ASN][1000 genomes]
rs56135160	1.00[ASN][1000 genomes]
rs56170994	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56213329	1.00[ASN][1000 genomes]
rs56328138	1.00[ASN][1000 genomes]
rs6459413	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6914558	1.00[ASN][1000 genomes]
rs6918979	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs72823461	1.00[ASN][1000 genomes]
rs73724483	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738190	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7739825	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7760793	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7772242	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7776332	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2762581	chr6:15763793-15774802	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv518098	chr6:15764675-15771988	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15762200-15782000	Weak transcription	Pancreas	Pancrea
2	chr6:15771200-15778000	Weak transcription	Gastric	stomach
3	chr6:15771800-15775400	Weak transcription	GM12878-XiMat	blood

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