Variant report

Variant	rs34080473
Chromosome Location	chr6:15753461-15753462
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:15751973..15755914-chr6:16127948..16130980,5	MCF-7	breast:
2	chr6:15752774..15753592-chr6:16183371..16184296,3	MCF-7	breast:
3	chr6:15753115..15755889-chr6:16132034..16133691,2	K562	blood:
4	chr6:15750377..15752176-chr6:15753133..15755816,2	K562	blood:
5	chr6:15752711..15753881-chr6:16128634..16130157,8	MCF-7	breast:
6	chr6:15753203..15753715-chr6:16129328..16129888,2	MCF-7	breast:
7	chr6:15745202..15755569-chr6:16127641..16133691,11	K562	blood:
8	chr6:15749337..15756995-chr6:16127743..16131944,10	MCF-7	breast:
9	chr6:15743873..15748458-chr6:15751737..15757129,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11751763	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753586	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759386	0.83[EUR][1000 genomes]
rs13199464	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16876746	1.00[ASN][1000 genomes]
rs17475195	0.82[EUR][1000 genomes]
rs1927582	1.00[ASN][1000 genomes]
rs1927583	1.00[ASN][1000 genomes]
rs1927584	1.00[ASN][1000 genomes]
rs2181435	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2206341	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34030405	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34669273	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35110594	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35835933	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36212519	1.00[ASN][1000 genomes]
rs374876	0.85[EUR][1000 genomes]
rs41413446	1.00[ASN][1000 genomes]
rs441539	0.86[EUR][1000 genomes]
rs4605871	1.00[ASN][1000 genomes]
rs55638296	1.00[ASN][1000 genomes]
rs55974491	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56135160	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56170994	1.00[ASN][1000 genomes]
rs56213329	1.00[ASN][1000 genomes]
rs56328138	1.00[ASN][1000 genomes]
rs6459413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66463311	0.81[EUR][1000 genomes]
rs6913914	1.00[ASN][1000 genomes]
rs6914558	1.00[ASN][1000 genomes]
rs6918979	1.00[ASN][1000 genomes]
rs72823461	1.00[ASN][1000 genomes]
rs73724483	1.00[ASN][1000 genomes]
rs7738190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739825	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749603	0.82[EUR][1000 genomes]
rs7760793	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768219	0.82[EUR][1000 genomes]
rs7772242	1.00[ASN][1000 genomes]
rs7776332	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15746000-15755200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:15752400-15754600	Weak transcription	Pancreas	Pancrea
3	chr6:15752600-15754400	Weak transcription	Esophagus	oesophagus
4	chr6:15753200-15753800	Weak transcription	NHDF-Ad	bronchial
5	chr6:15753200-15754200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:15753400-15754400	Weak transcription	K562	blood

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