Variant report

Variant	rs55974491
Chromosome Location	chr6:15747341-15747342
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15743873..15748458-chr6:15751737..15757129,6	MCF-7	breast:
2	chr6:15740904..15747364-chr6:15754114..15758056,5	K562	blood:
3	chr6:15745864..15748782-chr6:15755149..15758056,3	K562	blood:
4	chr6:15745202..15755569-chr6:16127641..16133691,11	K562	blood:
5	chr6:15739654..15744085-chr6:15745601..15748866,4	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11751763	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753586	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13199464	1.00[ASN][1000 genomes]
rs16876573	1.00[ASN][1000 genomes]
rs16876746	1.00[ASN][1000 genomes]
rs1927582	1.00[ASN][1000 genomes]
rs1927583	1.00[ASN][1000 genomes]
rs1927584	1.00[ASN][1000 genomes]
rs2181435	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2206341	1.00[ASN][1000 genomes]
rs34030405	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34080473	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34669273	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35110594	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35835933	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36212519	1.00[ASN][1000 genomes]
rs41413446	1.00[ASN][1000 genomes]
rs4605871	1.00[ASN][1000 genomes]
rs55638296	1.00[ASN][1000 genomes]
rs56135160	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56170994	1.00[ASN][1000 genomes]
rs56213329	1.00[ASN][1000 genomes]
rs56328138	1.00[ASN][1000 genomes]
rs6459413	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913914	1.00[ASN][1000 genomes]
rs6914558	1.00[ASN][1000 genomes]
rs6918979	1.00[ASN][1000 genomes]
rs72823461	1.00[ASN][1000 genomes]
rs73724483	1.00[ASN][1000 genomes]
rs7738190	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739825	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760793	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772242	1.00[ASN][1000 genomes]
rs7776332	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15746000-15755200	Weak transcription	H9 Cell Line	embryonic stem cell

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