Variant report

Variant	rs16876573
Chromosome Location	chr6:15524698-15524699
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15513759..15516208-chr6:15524311..15526503,2	K562	blood:
2	chr6:15522061..15524909-chr6:15526952..15529207,2	MCF-7	breast:
3	chr19:3098797..3100403-chr6:15522052..15525012,2	MCF-7	breast:
4	chr6:15522144..15525319-chr6:15525407..15528669,4	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11751763	1.00[ASN][1000 genomes]
rs16876746	1.00[ASN][1000 genomes]
rs1927582	1.00[ASN][1000 genomes]
rs1927583	1.00[ASN][1000 genomes]
rs1927584	1.00[ASN][1000 genomes]
rs34030405	1.00[ASN][1000 genomes]
rs35110594	1.00[ASN][1000 genomes]
rs35835933	1.00[ASN][1000 genomes]
rs36212519	1.00[ASN][1000 genomes]
rs4605871	1.00[ASN][1000 genomes]
rs55638296	1.00[ASN][1000 genomes]
rs55974491	1.00[ASN][1000 genomes]
rs56111601	1.00[ASN][1000 genomes]
rs56170994	1.00[ASN][1000 genomes]
rs56186721	1.00[ASN][1000 genomes]
rs56213329	1.00[ASN][1000 genomes]
rs56328138	1.00[ASN][1000 genomes]
rs6914558	1.00[ASN][1000 genomes]
rs73724483	1.00[ASN][1000 genomes]
rs7739825	1.00[ASN][1000 genomes]
rs7760793	1.00[ASN][1000 genomes]
rs7776332	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv522265	chr6:15494177-15546213	ZNF genes & repeats Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv428473	chr6:15522653-15595739	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15492200-15527000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:15492400-15527200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:15492800-15527000	Strong transcription	Primary T helper cells PMA-I stimulated	--
4	chr6:15494800-15527000	Strong transcription	Primary B cells from peripheral blood	blood
5	chr6:15495000-15527200	Strong transcription	Dnd41	blood
6	chr6:15495000-15529200	Strong transcription	Primary T cells from cord blood	blood
7	chr6:15495200-15525800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr6:15495400-15525000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:15496000-15525200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr6:15496000-15525600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:15496000-15526600	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr6:15496000-15528400	Strong transcription	Primary B cells from cord blood	blood
13	chr6:15497400-15526600	Strong transcription	Fetal Intestine Large	intestine
14	chr6:15506000-15527000	Strong transcription	Fetal Intestine Small	intestine
15	chr6:15506600-15527400	Strong transcription	Duodenum Mucosa	Duodenum
16	chr6:15506800-15525000	Strong transcription	Rectal Mucosa Donor 29	rectum
17	chr6:15507000-15533200	Weak transcription	HSMM	muscle
18	chr6:15507400-15524800	Strong transcription	Fetal Lung	lung
19	chr6:15507400-15529400	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr6:15509000-15525800	Weak transcription	Fetal Kidney	kidney
21	chr6:15509200-15525000	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr6:15509200-15527200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr6:15509400-15525000	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr6:15510000-15526800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:15510800-15527000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr6:15511200-15525400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:15511600-15528200	Weak transcription	Right Atrium	heart
28	chr6:15512000-15524800	Strong transcription	Muscle Satellite Cultured Cells	--
29	chr6:15512600-15525000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr6:15512600-15525600	Strong transcription	HepG2	liver
31	chr6:15512600-15531000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr6:15512600-15536400	Weak transcription	Psoas Muscle	Psoas
33	chr6:15515200-15525600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr6:15515200-15527000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:15515600-15525200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr6:15515800-15533600	Strong transcription	Thymus	Thymus
37	chr6:15516200-15525800	Strong transcription	Fetal Thymus	thymus
38	chr6:15516600-15525000	Strong transcription	Fetal Brain Female	brain
39	chr6:15516800-15524800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr6:15517400-15527000	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr6:15518400-15531400	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr6:15518600-15525200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr6:15519000-15525000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr6:15519400-15534200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr6:15519800-15525000	Strong transcription	Rectal Smooth Muscle	rectum
46	chr6:15520000-15524800	Strong transcription	HSMMtube	muscle
47	chr6:15520200-15525000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr6:15521600-15525000	Strong transcription	Osteobl	bone
49	chr6:15521800-15526600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr6:15522000-15524800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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