Variant report
| Variant | rs55638296 |
|---|---|
| Chromosome Location | chr6:15746931-15746932 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:15743873..15748458-chr6:15751737..15757129,6 | MCF-7 | breast: | |
| 2 | chr6:15740904..15747364-chr6:15754114..15758056,5 | K562 | blood: | |
| 3 | chr6:15745864..15748782-chr6:15755149..15758056,3 | K562 | blood: | |
| 4 | chr6:15745202..15755569-chr6:16127641..16133691,11 | K562 | blood: | |
| 5 | chr6:15739654..15744085-chr6:15745601..15748866,4 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000007944 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs11751763 | 1.00[ASN][1000 genomes] |
| rs11753586 | 1.00[ASN][1000 genomes] |
| rs13199464 | 1.00[ASN][1000 genomes] |
| rs16876573 | 1.00[ASN][1000 genomes] |
| rs16876746 | 1.00[ASN][1000 genomes] |
| rs1927582 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1927583 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1927584 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2181435 | 1.00[ASN][1000 genomes] |
| rs2206341 | 1.00[ASN][1000 genomes] |
| rs34030405 | 1.00[ASN][1000 genomes] |
| rs34080473 | 1.00[ASN][1000 genomes] |
| rs34669273 | 1.00[ASN][1000 genomes] |
| rs35110594 | 1.00[ASN][1000 genomes] |
| rs35835933 | 1.00[ASN][1000 genomes] |
| rs36212519 | 1.00[ASN][1000 genomes] |
| rs41413446 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs443804 | 0.83[EUR][1000 genomes] |
| rs4605871 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55974491 | 1.00[ASN][1000 genomes] |
| rs56135160 | 1.00[ASN][1000 genomes] |
| rs56170994 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56213329 | 1.00[ASN][1000 genomes] |
| rs56328138 | 1.00[ASN][1000 genomes] |
| rs6459413 | 1.00[ASN][1000 genomes] |
| rs6913914 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6914558 | 1.00[ASN][1000 genomes] |
| rs6918979 | 1.00[ASN][1000 genomes] |
| rs72823461 | 1.00[ASN][1000 genomes] |
| rs73724483 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7738190 | 1.00[ASN][1000 genomes] |
| rs7739825 | 1.00[ASN][1000 genomes] |
| rs7760793 | 1.00[ASN][1000 genomes] |
| rs7772242 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7776332 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv428136 | chr6:15595640-15781241 | Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:15746000-15755200 | Weak transcription | H9 Cell Line | embryonic stem cell |
