Variant report

Variant	rs1927582
Chromosome Location	chr6:15746398-15746399
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15739334..15746702-chr6:16128002..16131195,9	K562	blood:
2	chr6:15743873..15748458-chr6:15751737..15757129,6	MCF-7	breast:
3	chr6:15740904..15747364-chr6:15754114..15758056,5	K562	blood:
4	chr6:15745864..15748782-chr6:15755149..15758056,3	K562	blood:
5	chr6:15745202..15755569-chr6:16127641..16133691,11	K562	blood:
6	chr6:15736277..15738090-chr6:15744197..15746726,2	K562	blood:
7	chr6:15739654..15744085-chr6:15745601..15748866,4	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11751763	1.00[ASN][1000 genomes]
rs11753586	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13199464	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16876573	1.00[ASN][1000 genomes]
rs16876746	1.00[ASN][1000 genomes]
rs1927583	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1927584	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2181435	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2206341	1.00[ASN][1000 genomes]
rs34030405	1.00[ASN][1000 genomes]
rs34080473	1.00[ASN][1000 genomes]
rs34669273	1.00[ASN][1000 genomes]
rs35110594	1.00[ASN][1000 genomes]
rs35835933	1.00[ASN][1000 genomes]
rs36212519	1.00[ASN][1000 genomes]
rs41413446	1.00[CEU][hapmap];0.81[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs443804	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs4605871	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55638296	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55974491	1.00[ASN][1000 genomes]
rs56135160	1.00[ASN][1000 genomes]
rs56170994	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56213329	1.00[ASN][1000 genomes]
rs56328138	1.00[ASN][1000 genomes]
rs6459413	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6913914	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6914558	1.00[ASN][1000 genomes]
rs6918979	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs72823461	1.00[ASN][1000 genomes]
rs73724483	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738190	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7739825	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7760793	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7772242	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7776332	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15745200-15746400	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr6:15745200-15746600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr6:15746000-15755200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:15746200-15746400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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