Variant report

Variant	rs443804
Chromosome Location	chr6:15797273-15797274
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15797087..15799471-chr6:16128191..16130784,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs16876977	0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1927582	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs1927583	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs1927584	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs364837	0.95[ASN][1000 genomes]
rs372993	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs387754	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs388044	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs389429	0.82[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs398529	0.97[ASN][1000 genomes]
rs399391	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs399732	0.82[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs400186	0.97[ASN][1000 genomes]
rs400543	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs401126	0.82[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs407288	0.82[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs41413446	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs420036	0.93[ASN][1000 genomes]
rs420048	0.93[ASN][1000 genomes]
rs421665	0.82[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs421918	0.82[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs441539	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs453613	0.97[ASN][1000 genomes]
rs4605871	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs55638296	0.83[EUR][1000 genomes]
rs56170994	0.83[EUR][1000 genomes]
rs563398	0.82[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs563417	0.95[ASN][1000 genomes]
rs6913914	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs6918979	1.00[CEU][hapmap]
rs6933904	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs73724483	0.83[EUR][1000 genomes]
rs7772242	0.83[EUR][1000 genomes]
rs9358071	0.95[ASN][1000 genomes]
rs9370827	0.82[CHB][hapmap];0.92[JPT][hapmap];0.93[ASN][1000 genomes]
rs9370828	0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9383075	0.83[JPT][hapmap]
rs9383076	0.84[JPT][hapmap]
rs9383078	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9383079	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9396604	0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9396605	0.82[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15791000-15798000	Enhancers	Fetal Muscle Leg	muscle
2	chr6:15793200-15797600	Enhancers	Fetal Heart	heart
3	chr6:15795400-15797600	Enhancers	HSMMtube	muscle
4	chr6:15796000-15797800	Enhancers	Psoas Muscle	Psoas
5	chr6:15796400-15797400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:15796400-15797400	Enhancers	Left Ventricle	heart
7	chr6:15796400-15797400	Enhancers	Right Atrium	heart
8	chr6:15796400-15797400	Enhancers	Right Ventricle	heart
9	chr6:15796400-15798000	Enhancers	Placenta	Placenta
10	chr6:15796800-15797400	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr6:15796800-15797600	Enhancers	HMEC	breast
12	chr6:15797000-15797800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
13	chr6:15797000-15798000	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr6:15797000-15799000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
15	chr6:15797200-15798000	Enhancers	Aorta	Aorta

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