Variant report

Variant	rs6933904
Chromosome Location	chr6:15792828-15792829
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15786898..15789429-chr6:15792470..15795145,2	K562	blood:
2	chr6:15784886..15786712-chr6:15791467..15793235,2	K562	blood:
3	chr6:15789517..15794468-chr6:16128845..16131804,5	K562	blood:
4	chr6:15792221..15794486-chr6:16130159..16132712,2	MCF-7	breast:
5	chr6:15792187..15794246-chr6:16049902..16052089,2	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs16876927	0.84[ASN][1000 genomes]
rs16876933	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs16876977	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1887604	1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs1927573	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1927574	0.84[ASN][1000 genomes]
rs1927578	1.00[CHB][hapmap]
rs220888	1.00[CHB][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs220889	1.00[EUR][1000 genomes]
rs364837	0.94[ASN][1000 genomes]
rs372993	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs378646	1.00[EUR][1000 genomes]
rs387754	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs388044	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs389429	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs398529	0.97[ASN][1000 genomes]
rs399391	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs399732	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs400186	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs400543	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs401126	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs407288	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs420036	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs420048	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs421665	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs421918	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs441539	0.89[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap]
rs443804	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs453613	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs563398	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs563417	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9349987	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9358068	0.83[AMR][1000 genomes]
rs9358071	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9367881	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9370827	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9370828	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9370829	1.00[EUR][1000 genomes]
rs9383075	1.00[CHB][hapmap];0.93[CHD][hapmap];0.80[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9383076	1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9383078	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9383079	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396602	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9396604	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396605	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15790600-15793600	Enhancers	Fetal Intestine Small	intestine
2	chr6:15790600-15794600	Enhancers	Fetal Intestine Large	intestine
3	chr6:15790800-15793800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr6:15791000-15793800	Enhancers	Pancreas	Pancrea
5	chr6:15791000-15796400	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr6:15791000-15798000	Enhancers	Fetal Muscle Leg	muscle
7	chr6:15791200-15793200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:15791200-15793800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:15791400-15794400	Enhancers	HMEC	breast
10	chr6:15791600-15794600	Enhancers	HSMMtube	muscle
11	chr6:15791600-15796400	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr6:15791800-15793800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:15792000-15793000	Weak transcription	Aorta	Aorta
14	chr6:15792000-15793000	Enhancers	Fetal Muscle Trunk	muscle
15	chr6:15792000-15793200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:15792000-15794000	Enhancers	Psoas Muscle	Psoas
17	chr6:15792000-15794200	Enhancers	HSMM	muscle
18	chr6:15792000-15795400	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr6:15792000-15795400	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr6:15792200-15793600	Weak transcription	Gastric	stomach
21	chr6:15792200-15796400	Weak transcription	Placenta	Placenta
22	chr6:15792600-15793000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:15792600-15793000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:15792600-15793000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr6:15792600-15794400	Weak transcription	Fetal Lung	lung
26	chr6:15792800-15793600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:15792800-15793600	Flanking Active TSS	K562	blood
28	chr6:15792800-15794800	Enhancers	Left Ventricle	heart

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