Variant report

Variant	rs9396605
Chromosome Location	chr6:15796777-15796778
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15788511..15792316-chr6:15794070..15797091,4	K562	blood:
2	chr6:15793143..15797186-chr6:15800762..15804369,3	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs16876977	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs220888	1.00[EUR][1000 genomes]
rs220889	1.00[EUR][1000 genomes]
rs364837	0.82[ASN][1000 genomes]
rs372993	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs378646	1.00[EUR][1000 genomes]
rs387754	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs388044	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs389429	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs398529	0.85[ASN][1000 genomes]
rs399391	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs399732	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs400186	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs400543	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs401126	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs407288	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs420036	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs420048	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs421665	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs421918	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs443804	0.82[ASN][1000 genomes]
rs453613	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs563398	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs563417	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6933904	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9358071	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9370827	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9370828	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9370829	1.00[EUR][1000 genomes]
rs9383078	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9383079	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9396604	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15791000-15798000	Enhancers	Fetal Muscle Leg	muscle
2	chr6:15793200-15797600	Enhancers	Fetal Heart	heart
3	chr6:15793800-15796800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:15794400-15796800	Weak transcription	HMEC	breast
5	chr6:15795400-15796800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:15795400-15797600	Enhancers	HSMMtube	muscle
7	chr6:15796000-15797800	Enhancers	Psoas Muscle	Psoas
8	chr6:15796400-15797000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
9	chr6:15796400-15797200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr6:15796400-15797400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:15796400-15797400	Enhancers	Left Ventricle	heart
12	chr6:15796400-15797400	Enhancers	Right Atrium	heart
13	chr6:15796400-15797400	Enhancers	Right Ventricle	heart
14	chr6:15796400-15798000	Enhancers	Placenta	Placenta
15	chr6:15796600-15796800	Enhancers	Aorta	Aorta
16	chr6:15796600-15796800	Active TSS	Monocytes-CD14+_RO01746	blood
17	chr6:15796600-15797000	Enhancers	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links