Variant report

Variant	rs16876977
Chromosome Location	chr6:15794202-15794203
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:15788511..15792316-chr6:15794070..15797091,4	K562	blood:
2	chr6:15793178..15795083-chr6:15797445..15798994,2	K562	blood:
3	chr6:15786898..15789429-chr6:15792470..15795145,2	K562	blood:
4	chr6:15793762..15796353-chr6:16127942..16129864,3	MCF-7	breast:
5	chr6:15789517..15794468-chr6:16128845..16131804,5	K562	blood:
6	chr6:15792221..15794486-chr6:16130159..16132712,2	MCF-7	breast:
7	chr6:15793143..15797186-chr6:15800762..15804369,3	K562	blood:
8	chr6:15792187..15794246-chr6:16049902..16052089,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs16876927	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs16876933	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1887604	1.00[CHB][hapmap];0.88[AMR][1000 genomes]
rs1927573	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1927574	0.84[ASN][1000 genomes]
rs1927578	0.90[CHB][hapmap];0.83[AMR][1000 genomes]
rs220888	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs220889	1.00[EUR][1000 genomes]
rs364837	0.94[ASN][1000 genomes]
rs372993	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs378646	1.00[EUR][1000 genomes]
rs387754	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs388044	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs389429	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs389746	0.81[JPT][hapmap]
rs398529	0.97[ASN][1000 genomes]
rs399391	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs399732	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs400186	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs400543	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs401126	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs407288	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs420036	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs420048	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs421665	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs421918	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs441539	0.89[CHB][hapmap];0.88[JPT][hapmap]
rs443804	0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs453613	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs563398	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs563417	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6933904	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9349987	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9358068	0.88[AMR][1000 genomes]
rs9358071	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9367881	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9370827	1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9370828	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9370829	1.00[EUR][1000 genomes]
rs9383075	1.00[CHB][hapmap];0.88[JPT][hapmap];0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9383076	0.89[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9383077	0.83[AMR][1000 genomes]
rs9383078	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9383079	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396602	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9396604	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396605	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15790600-15794600	Enhancers	Fetal Intestine Large	intestine
2	chr6:15791000-15796400	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr6:15791000-15798000	Enhancers	Fetal Muscle Leg	muscle
4	chr6:15791400-15794400	Enhancers	HMEC	breast
5	chr6:15791600-15794600	Enhancers	HSMMtube	muscle
6	chr6:15791600-15796400	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr6:15792000-15795400	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr6:15792000-15795400	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr6:15792200-15796400	Weak transcription	Placenta	Placenta
10	chr6:15792600-15794400	Weak transcription	Fetal Lung	lung
11	chr6:15792800-15794800	Enhancers	Left Ventricle	heart
12	chr6:15793000-15794600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:15793200-15795200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr6:15793200-15797600	Enhancers	Fetal Heart	heart
15	chr6:15793400-15796600	Weak transcription	Aorta	Aorta
16	chr6:15793600-15795800	Enhancers	K562	blood
17	chr6:15793800-15794400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:15793800-15796800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr6:15794000-15794400	Weak transcription	Psoas Muscle	Psoas
20	chr6:15794200-15794400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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