Variant report

Variant	rs9370828
Chromosome Location	chr6:15795433-15795434
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15788511..15792316-chr6:15794070..15797091,4	K562	blood:
2	chr6:15793762..15796353-chr6:16127942..16129864,3	MCF-7	breast:
3	chr6:15793143..15797186-chr6:15800762..15804369,3	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs16876927	0.84[ASN][1000 genomes]
rs16876933	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs16876977	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1887604	1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs1927573	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1927574	0.84[ASN][1000 genomes]
rs1927578	0.90[CHB][hapmap]
rs220888	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs220889	1.00[EUR][1000 genomes]
rs364837	0.94[ASN][1000 genomes]
rs372993	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs378646	1.00[EUR][1000 genomes]
rs387754	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs388044	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs389429	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs389746	0.81[JPT][hapmap]
rs398529	0.97[ASN][1000 genomes]
rs399391	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs399732	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs400186	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs400543	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs401126	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs407288	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs420036	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs420048	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs421665	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs421918	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs441539	0.89[CHB][hapmap];0.88[JPT][hapmap]
rs443804	0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs453613	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs563398	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs563417	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6933904	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9349987	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9358068	0.83[AMR][1000 genomes]
rs9358071	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9367881	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9370827	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9370829	1.00[EUR][1000 genomes]
rs9383075	1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9383076	0.89[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9383078	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9383079	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396602	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9396604	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396605	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15791000-15796400	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr6:15791000-15798000	Enhancers	Fetal Muscle Leg	muscle
3	chr6:15791600-15796400	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr6:15792200-15796400	Weak transcription	Placenta	Placenta
5	chr6:15793200-15797600	Enhancers	Fetal Heart	heart
6	chr6:15793400-15796600	Weak transcription	Aorta	Aorta
7	chr6:15793600-15795800	Enhancers	K562	blood
8	chr6:15793800-15796800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr6:15794400-15796400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:15794400-15796800	Weak transcription	HMEC	breast
11	chr6:15794600-15796000	Weak transcription	Psoas Muscle	Psoas
12	chr6:15794800-15796400	Weak transcription	Left Ventricle	heart
13	chr6:15795000-15795600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:15795400-15796000	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr6:15795400-15796800	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr6:15795400-15797600	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links