Variant report

Variant	rs563417
Chromosome Location	chr6:15797953-15797954
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15793178..15795083-chr6:15797445..15798994,2	K562	blood:
2	chr6:15797087..15799471-chr6:16128191..16130784,2	MCF-7	breast:
3	chr6:15784288..15786128-chr6:15797785..15800646,2	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs16876977	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs220888	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs220889	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs364837	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs372993	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs378646	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs387754	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs388044	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs389429	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs389746	0.83[ASN][1000 genomes]
rs398529	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs399391	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs399732	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs400186	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs400543	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs401126	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs407288	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs420036	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs420048	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs421665	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs421918	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs443804	0.95[ASN][1000 genomes]
rs453613	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs563398	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6933904	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9358071	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9370827	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9370828	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9370829	0.83[EUR][1000 genomes]
rs9383078	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9383079	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9396604	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9396605	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15791000-15798000	Enhancers	Fetal Muscle Leg	muscle
2	chr6:15796400-15798000	Enhancers	Placenta	Placenta
3	chr6:15797000-15798000	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr6:15797000-15799000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
5	chr6:15797200-15798000	Enhancers	Aorta	Aorta
6	chr6:15797800-15799200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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